RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 MYH16Q9H6N6 1097 aa17.68■□□□□ 0.42
SHMT2-219ENST00000555563 NPR1P16066 1061 aa17.67■□□□□ 0.42
SHMT2-219ENST00000555563 EXOSC9Q06265 439 aaKnown RBP17.67■□□□□ 0.42
SHMT2-219ENST00000555563 MIER1Q8N108 512 aa17.67■□□□□ 0.42
SHMT2-219ENST00000555563 CNKSR1Q969H4 720 aa17.67■□□□□ 0.42
SHMT2-219ENST00000555563 UTP14AQ9BVJ6 771 aaKnown RBP17.67■□□□□ 0.42
SHMT2-219ENST00000555563 GPBP1L1Q9HC44 474 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-219ENST00000555563 CRY2Q49AN0 593 aa17.66■□□□□ 0.42
SHMT2-219ENST00000555563 PRPF40BQ6NWY9 871 aaKnown RBP17.66■□□□□ 0.42
SHMT2-219ENST00000555563 STK31Q9BXU1 1019 aa17.66■□□□□ 0.42
SHMT2-219ENST00000555563 RNF123Q5XPI4 1314 aa17.66■□□□□ 0.42
SHMT2-219ENST00000555563 LAMB2P55268 1798 aa17.66■□□□□ 0.42
SHMT2-219ENST00000555563 CEP350Q5VT06 3117 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 ATP5J2-PTCD1G3V325 749 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 RASSF7Q02833 373 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 IFFO2Q5TF58 517 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 C3orf67Q6ZVT6 689 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 RIC3Q7Z5B4 369 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 ZNF428Q96B54 188 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 ISCA1Q9BUE6 129 aa17.65■□□□□ 0.42
SHMT2-219ENST00000555563 ZNF219Q9P2Y4 722 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-219ENST00000555563 DDX60Q8IY21 1712 aaKnown RBP17.64■□□□□ 0.41
SHMT2-219ENST00000555563 C21orf2O43822 256 aa17.64■□□□□ 0.41
SHMT2-219ENST00000555563 VAMP4O75379 141 aa17.64■□□□□ 0.41
SHMT2-219ENST00000555563 SBF1O95248 1867 aa17.64■□□□□ 0.41
SHMT2-219ENST00000555563 FER1L6Q2WGJ9 1857 aa17.64■□□□□ 0.41
SHMT2-219ENST00000555563 SH3TC1Q8TE82 1336 aa17.64■□□□□ 0.41
SHMT2-219ENST00000555563 NFKBIEO00221 500 aa17.63■□□□□ 0.41
SHMT2-219ENST00000555563 DDX58O95786 925 aaKnown RBP17.63■□□□□ 0.41
SHMT2-219ENST00000555563 SYNE4Q8N205 404 aa17.63■□□□□ 0.41
SHMT2-219ENST00000555563 TRMT112Q9UI30 125 aaKnown RBP17.63■□□□□ 0.41
SHMT2-219ENST00000555563 TIAM2Q8IVF5 1701 aa17.62■□□□□ 0.41
SHMT2-219ENST00000555563 SLC10A5Q5PT55 438 aa17.62■□□□□ 0.41
SHMT2-219ENST00000555563 C9orf131Q5VYM1 1079 aa17.62■□□□□ 0.41
SHMT2-219ENST00000555563 ZNF526Q8TF50 670 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-219ENST00000555563 RPGRQ92834 1020 aaKnown RBP17.62■□□□□ 0.41
SHMT2-219ENST00000555563 SLC4A2P04920 1241 aa17.61■□□□□ 0.41
SHMT2-219ENST00000555563 G2E3Q7L622 706 aa17.61■□□□□ 0.41
SHMT2-219ENST00000555563 MYD88Q99836 296 aa17.61■□□□□ 0.41
SHMT2-219ENST00000555563 RNF181Q9P0P0 153 aa17.61■□□□□ 0.41
SHMT2-219ENST00000555563 MAP3K2Q9Y2U5 619 aa17.61■□□□□ 0.41
SHMT2-219ENST00000555563 CACNA1FO60840 1977 aa17.6■□□□□ 0.41
SHMT2-219ENST00000555563 E9PSI1 815 aa17.6■□□□□ 0.41
SHMT2-219ENST00000555563 HCLS1P14317 486 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-219ENST00000555563 HOXA10P31260 410 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-219ENST00000555563 PRELPP51888 382 aa17.6■□□□□ 0.41
SHMT2-219ENST00000555563 TRIM28Q13263 835 aaKnown RBP17.6■□□□□ 0.41
SHMT2-219ENST00000555563 C7orf43Q8WVR3 580 aa17.6■□□□□ 0.41
SHMT2-219ENST00000555563 NLRP3Q96P20 1036 aa17.6■□□□□ 0.41
SHMT2-219ENST00000555563 METTL22Q9BUU2 404 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-219ENST00000555563 PI4KAP2A4QPH2 592 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 ALDH1B1P30837 517 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 FLIIQ13045 1269 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 SOGA3Q5TF21 947 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 KSR2Q6VAB6 950 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 PI4KAP1Q8N8J0 262 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 FAM89AQ96GI7 184 aa17.59■□□□□ 0.41
SHMT2-219ENST00000555563 LTBP3Q9NS15 1303 aa17.58■□□□□ 0.4
SHMT2-219ENST00000555563 HSPA6P17066 643 aa17.58■□□□□ 0.4
SHMT2-219ENST00000555563 LMNB1P20700 586 aa17.58■□□□□ 0.4
SHMT2-219ENST00000555563 OLFM4Q6UX06 510 aa17.58■□□□□ 0.4
SHMT2-219ENST00000555563 RBM17Q96I25 401 aaKnown RBP17.58■□□□□ 0.4
SHMT2-219ENST00000555563 CCDC88AQ3V6T2 1871 aa17.58■□□□□ 0.4
SHMT2-219ENST00000555563 SNED1Q8TER0 1413 aa17.57■□□□□ 0.4
SHMT2-219ENST00000555563 SLFN5Q08AF3 891 aa17.57■□□□□ 0.4
SHMT2-219ENST00000555563 CCDC93Q567U6 631 aa17.57■□□□□ 0.4
SHMT2-219ENST00000555563 RTL5Q5HYW3 569 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-219ENST00000555563 CDCA7LQ96GN5 454 aa17.57■□□□□ 0.4
SHMT2-219ENST00000555563 CRAMP1Q96RY5 1269 aa17.57■□□□□ 0.4
SHMT2-219ENST00000555563 TAOK3Q9H2K8 898 aa17.57■□□□□ 0.4
SHMT2-219ENST00000555563 ABCC4O15439 1325 aa17.56■□□□□ 0.4
SHMT2-219ENST00000555563 IGKV5-2P06315 115 aa17.56■□□□□ 0.4
SHMT2-219ENST00000555563 FKBP5Q13451 457 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-219ENST00000555563 SLC51AQ86UW1 340 aa17.56■□□□□ 0.4
SHMT2-219ENST00000555563 ZBTB38Q8NAP3 1195 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-219ENST00000555563 CCDC191Q8NCU4 936 aa17.56■□□□□ 0.4
SHMT2-219ENST00000555563 CWC25Q9NXE8 425 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-219ENST00000555563 PPEF1O14829 653 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-219ENST00000555563 NEXNQ0ZGT2 675 aa17.55■□□□□ 0.4
SHMT2-219ENST00000555563 COL4A1P02462 1669 aa17.55■□□□□ 0.4
SHMT2-219ENST00000555563 DICER1Q9UPY3 1922 aaKnown RBP17.55■□□□□ 0.4
SHMT2-219ENST00000555563 IRS4O14654 1257 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-219ENST00000555563 ZC3H4Q9UPT8 1303 aaKnown RBP17.53■□□□□ 0.4
SHMT2-219ENST00000555563 TAF1P21675 1872 aa17.53■□□□□ 0.4
SHMT2-219ENST00000555563 NEURL1BA8MQ27 555 aa17.53■□□□□ 0.4
SHMT2-219ENST00000555563 PCCAP05165 728 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-219ENST00000555563 CWF19L2Q2TBE0 894 aaKnown RBP17.53■□□□□ 0.4
SHMT2-219ENST00000555563 DNAAF4Q8WXU2 420 aa17.53■□□□□ 0.4
SHMT2-219ENST00000555563 JARID2Q92833 1246 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-219ENST00000555563 LRRC37AA6NMS7 1700 aa17.52■□□□□ 0.4
SHMT2-219ENST00000555563 FKBP4Q02790 459 aaKnown RBP eCLIP17.52■□□□□ 0.4
SHMT2-219ENST00000555563 DDX46Q7L014 1031 aaKnown RBP17.52■□□□□ 0.4
SHMT2-219ENST00000555563 TRMT2AQ8IZ69 625 aaKnown RBP17.52■□□□□ 0.4
SHMT2-219ENST00000555563 RTKN2Q8IZC4 609 aa17.52■□□□□ 0.4
SHMT2-219ENST00000555563 F6X3S4 739 aa17.51■□□□□ 0.39
SHMT2-219ENST00000555563 KIF3CO14782 793 aa17.51■□□□□ 0.39
SHMT2-219ENST00000555563 GRAPQ13588 217 aa17.51■□□□□ 0.39
SHMT2-219ENST00000555563 SF3B3Q15393 1217 aaKnown RBP17.51■□□□□ 0.39
SHMT2-219ENST00000555563 CC2D2BQ6DHV5 1058 aa17.51■□□□□ 0.39
SHMT2-219ENST00000555563 GRAPLQ8TC17 118 aaPredicted RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms