RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 ZPR1O75312 459 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 RFC4P35249 363 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 ATP8B2P98198 1209 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 SF3B2Q13435 895 aaKnown RBP12.76□□□□□ -0.37
SRP54-208ENST00000555557 EPHA10Q5JZY3 1008 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 PPP1R42Q7Z4L9 355 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 BICC1Q9H694 974 aaKnown RBP12.76□□□□□ -0.37
SRP54-208ENST00000555557 NARFQ9UHQ1 456 aa12.76□□□□□ -0.37
SRP54-208ENST00000555557 TNS1Q9HBL0 1735 aaKnown RBP12.75□□□□□ -0.37
SRP54-208ENST00000555557 BICDL1Q6ZP65 573 aa12.75□□□□□ -0.37
SRP54-208ENST00000555557 NIP7Q9Y221 180 aaKnown RBP eCLIP12.75□□□□□ -0.37
SRP54-208ENST00000555557 SUSD4Q5VX71 490 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 AKT1S1Q96B36 256 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 TFCP2L1Q9NZI6 479 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 ZNF652Q9Y2D9 606 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 IBTKQ9P2D0 1353 aaPredicted RBP12.74□□□□□ -0.37
SRP54-208ENST00000555557 SRGAP3O43295 1099 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 TBC1D9BQ66K14 1250 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 CLEC4GQ6UXB4 293 aa12.74□□□□□ -0.37
SRP54-208ENST00000555557 ZBTB38Q8NAP3 1195 aaPredicted RBP12.74□□□□□ -0.37
SRP54-208ENST00000555557 TRMT112Q9UI30 125 aaKnown RBP12.74□□□□□ -0.37
SRP54-208ENST00000555557 SMC5Q8IY18 1101 aa12.73□□□□□ -0.37
SRP54-208ENST00000555557 AFDNP55196 1824 aaKnown RBP12.73□□□□□ -0.37
SRP54-208ENST00000555557 USP42Q9H9J4 1324 aaKnown RBP12.73□□□□□ -0.37
SRP54-208ENST00000555557 NUP98P52948 1817 aa12.73□□□□□ -0.37
SRP54-208ENST00000555557 APBB1O00213 710 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 HMMRO75330 724 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 PCCAP05165 728 aaPredicted RBP12.72□□□□□ -0.37
SRP54-208ENST00000555557 ADRA2BP18089 450 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 SSFA2P28290 1259 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 BAG6P46379 1132 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 BCL11AQ9H165 835 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 DCTPP1Q9H773 170 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 HDAC5Q9UQL6 1122 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 FOXO4P98177 505 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 SSH3Q8TE77 659 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 EXOC6BQ9Y2D4 811 aa12.72□□□□□ -0.37
SRP54-208ENST00000555557 POLA2Q14181 598 aa12.71□□□□□ -0.37
SRP54-208ENST00000555557 LMBR1LQ6UX01 489 aa12.71□□□□□ -0.37
SRP54-208ENST00000555557 NUTM1Q86Y26 1132 aa12.71□□□□□ -0.37
SRP54-208ENST00000555557 GCC1Q96CN9 775 aa12.71□□□□□ -0.37
SRP54-208ENST00000555557 UTP14AQ9BVJ6 771 aaKnown RBP12.71□□□□□ -0.37
SRP54-208ENST00000555557 ANO8Q9HCE9 1232 aaPredicted RBP12.71□□□□□ -0.37
SRP54-208ENST00000555557 MSH5O43196 834 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 MTX1Q13505 466 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 PARP10Q53GL7 1025 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 ANKRD45Q5TZF3 282 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 COL23A1Q86Y22 540 aaPredicted RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 CCDC85AQ96PX6 553 aaPredicted RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 PA2G4Q9UQ80 394 aaKnown RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 CHMP3Q9Y3E7 222 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 IRS4O14654 1257 aaPredicted RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 GYS1P13807 737 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 HCLS1P14317 486 aaPredicted RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 HMGB2P26583 209 aaKnown RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 RABL6Q3YEC7 729 aaPredicted RBP12.7□□□□□ -0.38
SRP54-208ENST00000555557 KLHDC4Q8TBB5 520 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 SETDB2Q96T68 719 aa12.7□□□□□ -0.38
SRP54-208ENST00000555557 SRCAPQ6ZRS2 3230 aa12.69□□□□□ -0.38
SRP54-208ENST00000555557 UBR3Q6ZT12 1888 aa12.69□□□□□ -0.38
SRP54-208ENST00000555557 SURF6O75683 361 aaKnown RBP12.69□□□□□ -0.38
SRP54-208ENST00000555557 NTSR2O95665 410 aa12.69□□□□□ -0.38
SRP54-208ENST00000555557 RGS3P49796 1198 aa12.69□□□□□ -0.38
SRP54-208ENST00000555557 LNPKQ9C0E8 428 aa12.69□□□□□ -0.38
SRP54-208ENST00000555557 BCORQ6W2J9 1755 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 SMARCA5O60264 1052 aaPredicted RBP12.68□□□□□ -0.38
SRP54-208ENST00000555557 NUCB1Q02818 461 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 NFIXQ14938 502 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 SLC15A2Q16348 729 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 PNPLA7Q6ZV29 1317 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 SH3TC1Q8TE82 1336 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 RGL2O15211 777 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 ERFEQ4G0M1 354 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 CDHR2Q9BYE9 1310 aa12.68□□□□□ -0.38
SRP54-208ENST00000555557 ANKRD36CQ5JPF3 1778 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 RFX5P48382 616 aaPredicted RBP12.67□□□□□ -0.38
SRP54-208ENST00000555557 CHD1LQ86WJ1 897 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 CCDC125Q86Z20 511 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 PLA2G12BQ9BX93 195 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 SIL1Q9H173 461 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 STK32BQ9NY57 414 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 C4AP0C0L4 1744 aa12.67□□□□□ -0.38
SRP54-208ENST00000555557 SCN7AQ01118 1682 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 PDE8AO60658 829 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 PDE4AP27815 886 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 GTF2E1P29083 439 aaPredicted RBP12.66□□□□□ -0.38
SRP54-208ENST00000555557 NBPF5PQ86XG9 351 aaPredicted RBP12.66□□□□□ -0.38
SRP54-208ENST00000555557 TTLL11Q8NHH1 800 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 RGPD3A6NKT7 1758 aaPredicted RBP12.66□□□□□ -0.38
SRP54-208ENST00000555557 RGPD4Q7Z3J3 1758 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 CSF1RP07333 972 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 CTSWP56202 376 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 PTPN12Q05209 780 aaKnown RBP12.66□□□□□ -0.38
SRP54-208ENST00000555557 FAM161AQ3B820 660 aa12.66□□□□□ -0.38
SRP54-208ENST00000555557 C16orf71Q8IYS4 520 aaPredicted RBP12.66□□□□□ -0.38
SRP54-208ENST00000555557 ZNF594Q96JF6 807 aaPredicted RBP12.66□□□□□ -0.38
SRP54-208ENST00000555557 TM4SF1P30408 202 aa12.65□□□□□ -0.38
SRP54-208ENST00000555557 FLAD1Q8NFF5 587 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms