RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SYNE4Q8N205 404 aa14.44□□□□□ -0.1
SHMT2-216ENST00000554975 CFAP44Q96MT7 982 aa14.44□□□□□ -0.1
SHMT2-216ENST00000554975 KLRG2A4D1S0 409 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-216ENST00000554975 KCNQ3O43525 872 aa14.43□□□□□ -0.1
SHMT2-216ENST00000554975 IL17REQ8NFR9 667 aa14.43□□□□□ -0.1
SHMT2-216ENST00000554975 EPS15P42566 896 aa14.42□□□□□ -0.1
SHMT2-216ENST00000554975 SCNN1DP51172 638 aa14.42□□□□□ -0.1
SHMT2-216ENST00000554975 NBPF5PQ86XG9 351 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-216ENST00000554975 BEGAINQ9BUH8 593 aa14.42□□□□□ -0.1
SHMT2-216ENST00000554975 GJA3Q9Y6H8 435 aa14.42□□□□□ -0.1
SHMT2-216ENST00000554975 PRAMEF22A3QJZ6 481 aa14.41□□□□□ -0.1
SHMT2-216ENST00000554975 PPP2R1AP30153 589 aa14.41□□□□□ -0.1
SHMT2-216ENST00000554975 ECE1P42892 770 aa14.41□□□□□ -0.1
SHMT2-216ENST00000554975 RTKN2Q8IZC4 609 aa14.41□□□□□ -0.1
SHMT2-216ENST00000554975 TEX13AQ9BXU3 409 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-216ENST00000554975 TLL2Q9Y6L7 1015 aa14.41□□□□□ -0.1
SHMT2-216ENST00000554975 NUP98P52948 1817 aa14.41□□□□□ -0.1
SHMT2-216ENST00000554975 FAM177BA6PVY3 158 aa14.4□□□□□ -0.1
SHMT2-216ENST00000554975 USP16Q9Y5T5 823 aa14.4□□□□□ -0.1
SHMT2-216ENST00000554975 DIAPH1O60610 1272 aaKnown RBP14.39□□□□□ -0.11
SHMT2-216ENST00000554975 FMNL2Q96PY5 1086 aa14.39□□□□□ -0.11
SHMT2-216ENST00000554975 POLR2AP24928 1970 aaKnown RBP14.39□□□□□ -0.11
SHMT2-216ENST00000554975 ABCC12Q96J65 1359 aa14.38□□□□□ -0.11
SHMT2-216ENST00000554975 MAP2K2P36507 400 aa14.38□□□□□ -0.11
SHMT2-216ENST00000554975 TEFQ10587 303 aa14.38□□□□□ -0.11
SHMT2-216ENST00000554975 DGKZQ13574 1117 aa14.38□□□□□ -0.11
SHMT2-216ENST00000554975 U2SURPO15042 1029 aaKnown RBP14.37□□□□□ -0.11
SHMT2-216ENST00000554975 RRP1P56182 461 aaKnown RBP14.37□□□□□ -0.11
SHMT2-216ENST00000554975 EIF6P56537 245 aaKnown RBP14.37□□□□□ -0.11
SHMT2-216ENST00000554975 IRX6P78412 446 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-216ENST00000554975 CLEC4GQ6UXB4 293 aa14.37□□□□□ -0.11
SHMT2-216ENST00000554975 SAPCD2Q86UD0 394 aa14.37□□□□□ -0.11
SHMT2-216ENST00000554975 JDP2Q8WYK2 163 aa14.37□□□□□ -0.11
SHMT2-216ENST00000554975 ZIC5Q96T25 663 aa14.37□□□□□ -0.11
SHMT2-216ENST00000554975 PSMD1Q99460 953 aa14.37□□□□□ -0.11
SHMT2-216ENST00000554975 RCAN3Q9UKA8 241 aa14.37□□□□□ -0.11
SHMT2-216ENST00000554975 NIP7Q9Y221 180 aaKnown RBP eCLIP14.37□□□□□ -0.11
SHMT2-216ENST00000554975 COL3A1P02461 1466 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-216ENST00000554975 LMOD1P29536 600 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-216ENST00000554975 NPM2Q86SE8 214 aaKnown RBP14.36□□□□□ -0.11
SHMT2-216ENST00000554975 CFAP53Q96M91 514 aa14.36□□□□□ -0.11
SHMT2-216ENST00000554975 CEMIPQ8WUJ3 1361 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 GNAT3A8MTJ3 354 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 NBPF26B4DH59 902 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 CELF2O95319 508 aaKnown RBP14.35□□□□□ -0.11
SHMT2-216ENST00000554975 HLFQ16534 295 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 CIAPIN1Q6FI81 312 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 NBPF10Q6P3W6 841 aaKnown RBP14.35□□□□□ -0.11
SHMT2-216ENST00000554975 USP50Q70EL3 339 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-216ENST00000554975 NBPF15Q8N660 670 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 AKAP11Q9UKA4 1901 aa14.35□□□□□ -0.11
SHMT2-216ENST00000554975 LAMB4A4D0S4 1761 aa14.34□□□□□ -0.11
SHMT2-216ENST00000554975 ALDH1B1P30837 517 aa14.34□□□□□ -0.11
SHMT2-216ENST00000554975 BRPF1P55201 1214 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-216ENST00000554975 SOX10P56693 466 aa14.34□□□□□ -0.11
SHMT2-216ENST00000554975 TPTE2Q6XPS3 522 aa14.34□□□□□ -0.11
SHMT2-216ENST00000554975 LARGE2Q8N3Y3 721 aa14.34□□□□□ -0.11
SHMT2-216ENST00000554975 GLIS2Q9BZE0 524 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-216ENST00000554975 CRY2Q49AN0 593 aa14.33□□□□□ -0.12
SHMT2-216ENST00000554975 NUTM1Q86Y26 1132 aa14.33□□□□□ -0.12
SHMT2-216ENST00000554975 CCDC136Q96JN2 1154 aa14.33□□□□□ -0.12
SHMT2-216ENST00000554975 ZNF652Q9Y2D9 606 aa14.33□□□□□ -0.12
SHMT2-216ENST00000554975 BTBD11A6QL63 1104 aa14.32□□□□□ -0.12
SHMT2-216ENST00000554975 CA12O43570 354 aa14.32□□□□□ -0.12
SHMT2-216ENST00000554975 TCERG1O14776 1098 aaKnown RBP14.31□□□□□ -0.12
SHMT2-216ENST00000554975 DLK2Q6UY11 383 aa14.31□□□□□ -0.12
SHMT2-216ENST00000554975 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-216ENST00000554975 GAS2L2Q8NHY3 880 aa14.31□□□□□ -0.12
SHMT2-216ENST00000554975 ADARB2Q9NS39 739 aaKnown RBP14.31□□□□□ -0.12
SHMT2-216ENST00000554975 GPRC5DQ9NZD1 345 aa14.31□□□□□ -0.12
SHMT2-216ENST00000554975 LAMB2P55268 1798 aa14.31□□□□□ -0.12
SHMT2-216ENST00000554975 TAF1P21675 1872 aa14.31□□□□□ -0.12
SHMT2-216ENST00000554975 RIC1Q4ADV7 1423 aa14.31□□□□□ -0.12
SHMT2-216ENST00000554975 PHACTR3Q96KR7 559 aa14.3□□□□□ -0.12
SHMT2-216ENST00000554975 ZNF408Q9H9D4 720 aa14.3□□□□□ -0.12
SHMT2-216ENST00000554975 SHTN1A0MZ66 631 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 HIRAP54198 1017 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-216ENST00000554975 AOC3Q16853 763 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 C3orf67Q6ZVT6 689 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 NIM1KQ8IY84 436 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 TRPM4Q8TD43 1214 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 HHIPL1Q96JK4 782 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 FANCIQ9NVI1 1328 aa14.29□□□□□ -0.12
SHMT2-216ENST00000554975 PPIP5K2O43314 1243 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 SNRPA1P09661 255 aaKnown RBP14.28□□□□□ -0.12
SHMT2-216ENST00000554975 GTF2E1P29083 439 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-216ENST00000554975 HOXA10P31260 410 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-216ENST00000554975 GMPSP49915 693 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-216ENST00000554975 CXCL9Q07325 125 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 GOLGA2Q08379 1002 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 NCBP3Q53F19 620 aaKnown RBP14.28□□□□□ -0.12
SHMT2-216ENST00000554975 CC2D2BQ6DHV5 1058 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 B4GALNT3Q6L9W6 998 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 ZNF521Q96K83 1311 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 ADAMTS8Q9UP79 889 aa14.28□□□□□ -0.12
SHMT2-216ENST00000554975 RBM19Q9Y4C8 960 aaKnown RBP14.28□□□□□ -0.12
SHMT2-216ENST00000554975 UBN2Q6ZU65 1347 aa14.27□□□□□ -0.12
SHMT2-216ENST00000554975 RGL2O15211 777 aa14.27□□□□□ -0.13
SHMT2-216ENST00000554975 U2AF1L5P0DN76 240 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-216ENST00000554975 U2AF1Q01081 240 aaKnown RBP eCLIP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms