RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 FOSBP53539 338 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 KLHDC4Q8TBB5 520 aa11.32□□□□□ -0.6
SYNE2-213ENST00000554805 HIP1O00291 1037 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 SUCLG2Q96I99 432 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 ZSWIM6Q9HCJ5 1215 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 FAM177BA6PVY3 158 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 GOLGA6L6A8MZA4 724 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 RNMTO43148 476 aaKnown RBP11.31□□□□□ -0.6
SYNE2-213ENST00000554805 NEXNQ0ZGT2 675 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 BICD2Q8TD16 824 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 EAF2Q96CJ1 260 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-213ENST00000554805 PKNOX2Q96KN3 472 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 NUP62CLQ9H1M0 184 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 BICC1Q9H694 974 aaKnown RBP11.31□□□□□ -0.6
SYNE2-213ENST00000554805 TPCN1Q9ULQ1 816 aa11.31□□□□□ -0.6
SYNE2-213ENST00000554805 GRM8O00222 908 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 PDCP20941 246 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 CHAF1AQ13111 956 aaPredicted RBP11.3□□□□□ -0.6
SYNE2-213ENST00000554805 MAP3K11Q16584 847 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 PIBF1Q8WXW3 757 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 IL17RAQ96F46 866 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 ADCY9O60503 1353 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 SLC27A2O14975 620 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 CDC37L1Q7L3B6 337 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 SPATA32Q96LK8 384 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 TNMDQ9H2S6 317 aa11.3□□□□□ -0.6
SYNE2-213ENST00000554805 H3BQV1 296 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 IFFO2Q5TF58 517 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 EDC3Q96F86 508 aaKnown RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 ORAI2Q96SN7 254 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 TM6SF1Q9BZW5 370 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 TLR7Q9NYK1 1049 aaKnown RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 SETD1BQ9UPS6 1966 aaKnown RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 GIGYF1O75420 1035 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 SLC39A6Q13433 755 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 AMOTQ4VCS5 1084 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 TTC6Q86TZ1 520 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 KCNH5Q8NCM2 988 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 LINS1Q8NG48 757 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 DNAJC2Q99543 621 aaKnown RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 A0A0D9SFI3 127 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 HMGN5P82970 282 aaKnown RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 CEBPZQ03701 1054 aaKnown RBP11.29□□□□□ -0.6
SYNE2-213ENST00000554805 NECTIN1Q15223 517 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 DDX11Q96FC9 970 aa11.29□□□□□ -0.6
SYNE2-213ENST00000554805 PXDNLA1KZ92 1463 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 LIG1P18858 919 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 ANKRD1Q15327 319 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 MTERF4Q7Z6M4 381 aaKnown RBP11.28□□□□□ -0.6
SYNE2-213ENST00000554805 SASH1O94885 1247 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 ANKRD24Q8TF21 1146 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 MYD88Q99836 296 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 DACT1Q9NYF0 836 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 RGPD1P0DJD0 1748 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 PIP4K2AP48426 406 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-213ENST00000554805 LARP1Q6PKG0 1096 aaKnown RBP11.28□□□□□ -0.6
SYNE2-213ENST00000554805 TRIM5Q9C035 493 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 NDUFB9Q9Y6M9 179 aa11.28□□□□□ -0.6
SYNE2-213ENST00000554805 MTX1Q13505 466 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 LUZP1Q86V48 1076 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 MYRIPQ8NFW9 859 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 MAP4K1Q92918 833 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 CEMIPQ8WUJ3 1361 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 TYRO3Q06418 890 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 USP42Q9H9J4 1324 aaKnown RBP11.27□□□□□ -0.61
SYNE2-213ENST00000554805 DIP2AQ14689 1571 aa11.27□□□□□ -0.61
SYNE2-213ENST00000554805 PRIMPOLQ96LW4 560 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 LRRC2Q9BYS8 371 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-213ENST00000554805 RPS6KB1P23443 525 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 ZC3H6P61129 1189 aaKnown RBP11.26□□□□□ -0.61
SYNE2-213ENST00000554805 ST3GAL1Q11201 340 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 COL9A3Q14050 684 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-213ENST00000554805 FAM200AQ8TCP9 573 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 XAGE3Q8WTP9 111 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 SCAND2PQ9GZW5 306 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-213ENST00000554805 NLRP2Q9NX02 1062 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 PYCARDQ9ULZ3 195 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 GCP02774 474 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 TPM3P06753 285 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 ANO6Q4KMQ2 910 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 PRDM10Q9NQV6 1147 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 KIF3AQ9Y496 699 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 TAF6LQ9Y6J9 622 aa11.26□□□□□ -0.61
SYNE2-213ENST00000554805 PPFIA3O75145 1194 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 PTGS1P23219 599 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 COPS6Q7L5N1 327 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 ZNF589Q86UQ0 364 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-213ENST00000554805 DDX21Q9NR30 783 aaKnown RBP eCLIP11.25□□□□□ -0.61
SYNE2-213ENST00000554805 PODXL2Q9NZ53 605 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 AP5Z1O43299 807 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 JAK2O60674 1132 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 CSB-PGBD3P0DP91 1061 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 CCDC129Q6ZRS4 1044 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 RAPGEF4Q8WZA2 1011 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 BCL11BQ9C0K0 894 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-213ENST00000554805 TCHHQ07283 1943 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 A0A0G2JS52 829 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 CABLES1Q8TDN4 633 aa11.25□□□□□ -0.61
SYNE2-213ENST00000554805 NEUROD6Q96NK8 337 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms