RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 FAM182BQ5T319 152 aa3.01□□□□□ -1.93
PRPF39-208ENST00000554785 RAB44Q7Z6P3 723 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-208ENST00000554785 CD163Q86VB7 1156 aa3.01□□□□□ -1.93
PRPF39-208ENST00000554785 CHMP7Q8WUX9 453 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-208ENST00000554785 NACC1Q96RE7 527 aa3.01□□□□□ -1.93
PRPF39-208ENST00000554785 C2orf49Q9BVC5 232 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-208ENST00000554785 SEMA6BQ9H3T3 888 aa3.01□□□□□ -1.93
PRPF39-208ENST00000554785 GJA3Q9Y6H8 435 aa3.01□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L15C9J2P7 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L10C9JJH3 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L13C9JLJ4 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L12C9JPN9 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L11C9JVI0 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L21D6R901 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L18D6R9N7 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L22D6RA61 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L17D6RBQ6 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L19D6RCP7 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L20D6RJB6 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 PPP1R12BO60237 982 aaPredicted RBP3□□□□□ -1.93
PRPF39-208ENST00000554785 HIRAP54198 1017 aaPredicted RBP3□□□□□ -1.93
PRPF39-208ENST00000554785 SEC13P55735 322 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 USP17L24Q0WX57 530 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 ZNF468Q5VIY5 522 aaPredicted RBP3□□□□□ -1.93
PRPF39-208ENST00000554785 MCTP1Q6DN14 999 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 ALDH16A1Q8IZ83 802 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 MDFIQ99750 246 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 HINFPQ9BQA5 517 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 MARK1Q9P0L2 795 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 BCS1LQ9Y276 419 aa3□□□□□ -1.93
PRPF39-208ENST00000554785 SUPT5HO00267 1087 aaKnown RBP2.99□□□□□ -1.93
PRPF39-208ENST00000554785 RFX1P22670 979 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 ADH6P28332 368 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 DGKGP49619 791 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 PRRT3Q5FWE3 981 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 SYT9Q86SS6 491 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 RHPN1Q8TCX5 695 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 NGLY1Q96IV0 654 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 SUSD3Q96L08 255 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 PRR12Q9ULL5 1215 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 FAM196BA6NMK8 535 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 APBA3O96018 575 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 GRNP28799 593 aaKnown RBP2.99□□□□□ -1.93
PRPF39-208ENST00000554785 TYRO3Q06418 890 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 CHSY3Q70JA7 882 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 ANKMY2Q8IV38 441 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 VRTNQ9H8Y1 702 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 BRD7Q9NPI1 651 aa2.99□□□□□ -1.93
PRPF39-208ENST00000554785 C1orf53Q5VUE5 145 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 LARP1Q6PKG0 1096 aaKnown RBP2.98□□□□□ -1.93
PRPF39-208ENST00000554785 C8orf86Q6ZUL3 223 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 TRIM11Q96F44 468 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 CEP63Q96MT8 703 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 WEE1P30291 646 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 SRPK2P78362 688 aaKnown RBP2.98□□□□□ -1.93
PRPF39-208ENST00000554785 SPEM2Q0P670 501 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 COL9A3Q14050 684 aaPredicted RBP2.98□□□□□ -1.93
PRPF39-208ENST00000554785 BTLAQ7Z6A9 289 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 STAG2Q8N3U4 1231 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 NEUROD4Q9HD90 331 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 KLK14Q9P0G3 267 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 DMGDHQ9UI17 866 aaKnown RBP2.98□□□□□ -1.93
PRPF39-208ENST00000554785 ZMIZ1Q9ULJ6 1067 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 STARD13Q9Y3M8 1113 aa2.98□□□□□ -1.93
PRPF39-208ENST00000554785 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-208ENST00000554785 ALAS2P22557 587 aa2.97□□□□□ -1.93
PRPF39-208ENST00000554785 CAPN12Q6ZSI9 719 aa2.97□□□□□ -1.93
PRPF39-208ENST00000554785 QTRT2Q9H974 415 aaKnown RBP2.97□□□□□ -1.93
PRPF39-208ENST00000554785 LRFN2Q9ULH4 789 aa2.97□□□□□ -1.93
PRPF39-208ENST00000554785 RBM19Q9Y4C8 960 aaKnown RBP2.97□□□□□ -1.93
PRPF39-208ENST00000554785 GPC6Q9Y625 555 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-208ENST00000554785 ELOA3CA0A087WX78 387 aaPredicted RBP2.96□□□□□ -1.93
PRPF39-208ENST00000554785 ELOA3DA6NLF2 546 aaPredicted RBP2.96□□□□□ -1.93
PRPF39-208ENST00000554785 H2AFB1P0C5Y9 115 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 H2AFB2P0C5Z0 115 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 CHRNA4P43681 627 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 KCNQ4P56696 695 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 FAM69CQ0P6D2 419 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 DOC2BQ14184 412 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 ELOA3BQ3SY89 546 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 LCE4AQ5TA78 99 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 ELOA3Q8NG57 546 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 STK32AQ8WU08 396 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 PRDM6Q9NQX0 595 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 USP20Q9Y2K6 914 aa2.96□□□□□ -1.93
PRPF39-208ENST00000554785 ARID3CA6NKF2 412 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 ADARB2-AS1A8MUL3 147 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 SIN3BO75182 1162 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 ALBP02768 609 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 IGFBP4P22692 258 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 FKBP5Q13451 457 aaPredicted RBP2.96□□□□□ -1.94
PRPF39-208ENST00000554785 LRP8Q14114 963 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 RTN1Q16799 776 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 RSPO4Q2I0M5 234 aaPredicted RBP2.96□□□□□ -1.94
PRPF39-208ENST00000554785 FAM26DQ5JW98 314 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 NKAPLQ5M9Q1 402 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 SLC51AQ86UW1 340 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 TNFRSF25Q93038 417 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 BHMTQ93088 406 aa2.96□□□□□ -1.94
PRPF39-208ENST00000554785 PRIMPOLQ96LW4 560 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms