RNA–Protein interactions for RNA: ENST00000554180.5

TDP1-209, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-209ENST00000554180 UBE3BQ7Z3V4 1068 aa9.55□□□□□ -0.88
TDP1-209ENST00000554180 ZBTB38Q8NAP3 1195 aaPredicted RBP9.55□□□□□ -0.88
TDP1-209ENST00000554180 CAMKK2Q96RR4 588 aa9.55□□□□□ -0.88
TDP1-209ENST00000554180 CDHR2Q9BYE9 1310 aa9.55□□□□□ -0.88
TDP1-209ENST00000554180 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.54□□□□□ -0.88
TDP1-209ENST00000554180 HSP90B1P14625 803 aaKnown RBP9.54□□□□□ -0.88
TDP1-209ENST00000554180 RFC4P35249 363 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 POLA2Q14181 598 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 RABL6Q3YEC7 729 aaPredicted RBP9.54□□□□□ -0.88
TDP1-209ENST00000554180 PELP1Q8IZL8 1130 aaKnown RBP9.54□□□□□ -0.88
TDP1-209ENST00000554180 FLAD1Q8NFF5 587 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 SSH3Q8TE77 659 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 ARHGEF1Q92888 912 aaKnown RBP9.54□□□□□ -0.88
TDP1-209ENST00000554180 AKT1S1Q96B36 256 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 SUCLG2Q96I99 432 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 PLA2G12BQ9BX93 195 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 DCTPP1Q9H773 170 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 UBN2Q6ZU65 1347 aa9.54□□□□□ -0.88
TDP1-209ENST00000554180 UBR3Q6ZT12 1888 aa9.53□□□□□ -0.88
TDP1-209ENST00000554180 GPTP24298 496 aa9.53□□□□□ -0.88
TDP1-209ENST00000554180 PPP1R42Q7Z4L9 355 aa9.53□□□□□ -0.88
TDP1-209ENST00000554180 AMIGO3Q86WK7 504 aa9.53□□□□□ -0.88
TDP1-209ENST00000554180 KAZALD1Q96I82 304 aa9.53□□□□□ -0.88
TDP1-209ENST00000554180 BICC1Q9H694 974 aaKnown RBP9.53□□□□□ -0.88
TDP1-209ENST00000554180 NIP7Q9Y221 180 aaKnown RBP eCLIP9.53□□□□□ -0.88
TDP1-209ENST00000554180 NUP98P52948 1817 aa9.53□□□□□ -0.88
TDP1-209ENST00000554180 AFDNP55196 1824 aaKnown RBP9.53□□□□□ -0.88
TDP1-209ENST00000554180 PNMA6EA0A0J9YXQ4 647 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 SRGAP3O43295 1099 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 PHF14O94880 888 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 C4AP0C0L4 1744 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 ZNF827Q17R98 1081 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 USPL1Q5W0Q7 1092 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 UTP14AQ9BVJ6 771 aaKnown RBP9.52□□□□□ -0.89
TDP1-209ENST00000554180 BCL2L12Q9HB09 334 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 TFCP2L1Q9NZI6 479 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 TRMT112Q9UI30 125 aaKnown RBP9.52□□□□□ -0.89
TDP1-209ENST00000554180 SH3TC1Q8TE82 1336 aa9.52□□□□□ -0.89
TDP1-209ENST00000554180 NTSR2O95665 410 aa9.51□□□□□ -0.89
TDP1-209ENST00000554180 EN1Q05925 392 aaPredicted RBP9.51□□□□□ -0.89
TDP1-209ENST00000554180 HSP90AB4PQ58FF6 505 aa9.51□□□□□ -0.89
TDP1-209ENST00000554180 POTEDQ86YR6 584 aa9.51□□□□□ -0.89
TDP1-209ENST00000554180 NYXQ9GZU5 481 aa9.51□□□□□ -0.89
TDP1-209ENST00000554180 SRP68Q9UHB9 627 aaKnown RBP9.51□□□□□ -0.89
TDP1-209ENST00000554180 NOP58Q9Y2X3 529 aaKnown RBP9.51□□□□□ -0.89
TDP1-209ENST00000554180 COL24A1Q17RW2 1714 aa9.51□□□□□ -0.89
TDP1-209ENST00000554180 CARMIL3Q8ND23 1372 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 IRS4O14654 1257 aaPredicted RBP9.5□□□□□ -0.89
TDP1-209ENST00000554180 RAB11FIP3O75154 756 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 GYS1P13807 737 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 FOXO4P98177 505 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 NUCB1Q02818 461 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 EZH2Q15910 746 aaKnown RBP9.5□□□□□ -0.89
TDP1-209ENST00000554180 EPHA10Q5JZY3 1008 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 SUSD4Q5VX71 490 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 TBC1D9BQ66K14 1250 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 FAM89AQ96GI7 184 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 SETDB2Q96T68 719 aa9.5□□□□□ -0.89
TDP1-209ENST00000554180 PDE8AO60658 829 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 CSF1RP07333 972 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 CTSWP56202 376 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 SLC15A2Q16348 729 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 LMBR1LQ6UX01 489 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 CHD1LQ86WJ1 897 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 ERC1Q8IUD2 1116 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 COPRSQ9NQ92 184 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 STK32BQ9NY57 414 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 ZBTB47Q9UFB7 747 aaPredicted RBP9.49□□□□□ -0.89
TDP1-209ENST00000554180 PDZRN3Q9UPQ7 1066 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 RTL9Q8NET4 1388 aa9.49□□□□□ -0.89
TDP1-209ENST00000554180 RIC1Q4ADV7 1423 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 RFX5P48382 616 aaPredicted RBP9.48□□□□□ -0.89
TDP1-209ENST00000554180 TPTE2Q6XPS3 522 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 SMIM5Q71RC9 77 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 NBPF5PQ86XG9 351 aaPredicted RBP9.48□□□□□ -0.89
TDP1-209ENST00000554180 NLGN1Q8N2Q7 840 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 JARID2Q92833 1246 aaPredicted RBP9.48□□□□□ -0.89
TDP1-209ENST00000554180 KIF1BPQ96EK5 621 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 ANO8Q9HCE9 1232 aaPredicted RBP9.48□□□□□ -0.89
TDP1-209ENST00000554180 FBXO3Q9UK99 471 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 PNPLA7Q6ZV29 1317 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 QSER1Q2KHR3 1735 aa9.48□□□□□ -0.89
TDP1-209ENST00000554180 LAMB2P55268 1798 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 SURF6O75683 361 aaKnown RBP9.47□□□□□ -0.89
TDP1-209ENST00000554180 PTPN12Q05209 780 aaKnown RBP9.47□□□□□ -0.89
TDP1-209ENST00000554180 NFIXQ14938 502 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 RTL5Q5HYW3 569 aaPredicted RBP9.47□□□□□ -0.89
TDP1-209ENST00000554180 SLC10A5Q5PT55 438 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 ANKRD45Q5TZF3 282 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 DEFB132Q7Z7B7 95 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 COL23A1Q86Y22 540 aaPredicted RBP9.47□□□□□ -0.89
TDP1-209ENST00000554180 TTLL11Q8NHH1 800 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 LRRCC1Q9C099 1032 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 EXOC6BQ9Y2D4 811 aa9.47□□□□□ -0.89
TDP1-209ENST00000554180 CIAO1O76071 339 aa9.46□□□□□ -0.9
TDP1-209ENST00000554180 GTF2E1P29083 439 aaPredicted RBP9.46□□□□□ -0.9
TDP1-209ENST00000554180 TM4SF1P30408 202 aa9.46□□□□□ -0.9
TDP1-209ENST00000554180 G3BP1Q13283 466 aaKnown RBP eCLIP9.46□□□□□ -0.9
TDP1-209ENST00000554180 CCDC57Q2TAC2 916 aa9.46□□□□□ -0.9
TDP1-209ENST00000554180 CCDC152Q4G0S7 254 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms