RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 UTP14AQ9BVJ6 771 aaKnown RBP15.5■□□□□ 0.07
SHMT2-209ENST00000553949 SRCIN1Q9C0H9 1055 aa15.5■□□□□ 0.07
SHMT2-209ENST00000553949 NUP98P52948 1817 aa15.5■□□□□ 0.07
SHMT2-209ENST00000553949 NTSR2O95665 410 aa15.49■□□□□ 0.07
SHMT2-209ENST00000553949 MS4A1P11836 297 aa15.49■□□□□ 0.07
SHMT2-209ENST00000553949 RLBP1P12271 317 aa15.49■□□□□ 0.07
SHMT2-209ENST00000553949 GCKRQ14397 625 aa15.49■□□□□ 0.07
SHMT2-209ENST00000553949 INTS3Q68E01 1043 aaKnown RBP15.49■□□□□ 0.07
SHMT2-209ENST00000553949 TPTE2Q6XPS3 522 aa15.49■□□□□ 0.07
SHMT2-209ENST00000553949 NYXQ9GZU5 481 aa15.49■□□□□ 0.07
SHMT2-209ENST00000553949 IBTKQ9P2D0 1353 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-209ENST00000553949 TMEM57Q8N5G2 664 aa15.48■□□□□ 0.07
SHMT2-209ENST00000553949 CNBD1Q8NA66 436 aa15.48■□□□□ 0.07
SHMT2-209ENST00000553949 PANK1Q8TE04 598 aa15.48■□□□□ 0.07
SHMT2-209ENST00000553949 TRMT112Q9UI30 125 aaKnown RBP15.48■□□□□ 0.07
SHMT2-209ENST00000553949 SUPT16HQ9Y5B9 1047 aaKnown RBP15.48■□□□□ 0.07
SHMT2-209ENST00000553949 RNF123Q5XPI4 1314 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 NPHP1O15259 732 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 PDE3AQ14432 1141 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 COL24A1Q17RW2 1714 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 PRR5LQ6MZQ0 368 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 NUTM1Q86Y26 1132 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 ZBTB38Q8NAP3 1195 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-209ENST00000553949 ANKRD36CQ5JPF3 1778 aa15.47■□□□□ 0.07
SHMT2-209ENST00000553949 SH3TC1Q8TE82 1336 aa15.46■□□□□ 0.07
SHMT2-209ENST00000553949 GTF2E1P29083 439 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-209ENST00000553949 ERFEQ4G0M1 354 aa15.46■□□□□ 0.07
SHMT2-209ENST00000553949 C20orf194Q5TEA3 1177 aa15.46■□□□□ 0.07
SHMT2-209ENST00000553949 FAM89AQ96GI7 184 aa15.46■□□□□ 0.07
SHMT2-209ENST00000553949 H7C1W4 665 aa15.45■□□□□ 0.06
SHMT2-209ENST00000553949 GRM8O00222 908 aa15.45■□□□□ 0.06
SHMT2-209ENST00000553949 PCCAP05165 728 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-209ENST00000553949 ST5P78524 1137 aa15.45■□□□□ 0.06
SHMT2-209ENST00000553949 RTL5Q5HYW3 569 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-209ENST00000553949 ITPRIPQ8IWB1 547 aa15.45■□□□□ 0.06
SHMT2-209ENST00000553949 SYNE4Q8N205 404 aa15.45■□□□□ 0.06
SHMT2-209ENST00000553949 CCDC24Q8N4L8 307 aa15.45■□□□□ 0.06
SHMT2-209ENST00000553949 JARID2Q92833 1246 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-209ENST00000553949 C9orf78Q9NZ63 289 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-209ENST00000553949 CASP7P55210 303 aa15.44■□□□□ 0.06
SHMT2-209ENST00000553949 UBE3BQ7Z3V4 1068 aa15.44■□□□□ 0.06
SHMT2-209ENST00000553949 USP44Q9H0E7 712 aa15.44■□□□□ 0.06
SHMT2-209ENST00000553949 ABCC12Q96J65 1359 aa15.44■□□□□ 0.06
SHMT2-209ENST00000553949 IRS4O14654 1257 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-209ENST00000553949 NBPF7P0C2Y1 421 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-209ENST00000553949 SLC10A5Q5PT55 438 aa15.43■□□□□ 0.06
SHMT2-209ENST00000553949 COG6Q9Y2V7 657 aa15.43■□□□□ 0.06
SHMT2-209ENST00000553949 C10orf71Q711Q0 1435 aa15.43■□□□□ 0.06
SHMT2-209ENST00000553949 UTYO14607 1347 aa15.43■□□□□ 0.06
SHMT2-209ENST00000553949 CDHR2Q9BYE9 1310 aa15.43■□□□□ 0.06
SHMT2-209ENST00000553949 HCLS1P14317 486 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-209ENST00000553949 MVPQ14764 893 aaKnown RBP15.42■□□□□ 0.06
SHMT2-209ENST00000553949 MEIS3Q99687 375 aa15.42■□□□□ 0.06
SHMT2-209ENST00000553949 BRIP1Q9BX63 1249 aa15.42■□□□□ 0.06
SHMT2-209ENST00000553949 NRXN2Q9P2S2 1712 aa15.42■□□□□ 0.06
SHMT2-209ENST00000553949 HSP90B1P14625 803 aaKnown RBP15.41■□□□□ 0.06
SHMT2-209ENST00000553949 PPP1R1BQ9UD71 204 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-209ENST00000553949 N4BP2Q86UW6 1770 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-209ENST00000553949 ZBTB7BO15156 539 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-209ENST00000553949 UBTFL1P0CB47 393 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-209ENST00000553949 C3orf67Q6ZVT6 689 aa15.4■□□□□ 0.06
SHMT2-209ENST00000553949 DDX19BQ9UMR2 479 aa15.4■□□□□ 0.06
SHMT2-209ENST00000553949 CD2APQ9Y5K6 639 aa15.4■□□□□ 0.06
SHMT2-209ENST00000553949 RIC1Q4ADV7 1423 aa15.4■□□□□ 0.06
SHMT2-209ENST00000553949 AFDNP55196 1824 aaKnown RBP15.4■□□□□ 0.06
SHMT2-209ENST00000553949 SRCAPQ6ZRS2 3230 aa15.39■□□□□ 0.06
SHMT2-209ENST00000553949 PDE8AO60658 829 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 GNAI3P08754 354 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 PDE6BP35913 854 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 KLHL34Q8N239 644 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 SUCLG2Q96I99 432 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 NLRP3Q96P20 1036 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 PLA2G12BQ9BX93 195 aa15.39■□□□□ 0.05
SHMT2-209ENST00000553949 KLRG2A4D1S0 409 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-209ENST00000553949 KAZALD1Q96I82 304 aa15.38■□□□□ 0.05
SHMT2-209ENST00000553949 FHDC1Q9C0D6 1143 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-209ENST00000553949 CTSWP56202 376 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 FOXO4P98177 505 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 SF3B3Q15393 1217 aaKnown RBP15.37■□□□□ 0.05
SHMT2-209ENST00000553949 EPHA10Q5JZY3 1008 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 C2CD5Q86YS7 1000 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 CRBNQ96SW2 442 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 CHMP4BQ9H444 224 aaKnown RBP15.37■□□□□ 0.05
SHMT2-209ENST00000553949 PDZRN3Q9UPQ7 1066 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 HDAC5Q9UQL6 1122 aa15.37■□□□□ 0.05
SHMT2-209ENST00000553949 LRP5O75197 1615 aa15.36■□□□□ 0.05
SHMT2-209ENST00000553949 H0YIN7 160 aa15.36■□□□□ 0.05
SHMT2-209ENST00000553949 GNAI2P04899 355 aa15.36■□□□□ 0.05
SHMT2-209ENST00000553949 TGFB2P61812 414 aa15.36■□□□□ 0.05
SHMT2-209ENST00000553949 CRY2Q49AN0 593 aa15.36■□□□□ 0.05
SHMT2-209ENST00000553949 ZBTB40Q9NUA8 1239 aa15.36■□□□□ 0.05
SHMT2-209ENST00000553949 LRRFIP2Q9Y608 721 aaKnown RBP15.36■□□□□ 0.05
SHMT2-209ENST00000553949 TNRC6CQ9HCJ0 1690 aaKnown RBP15.35■□□□□ 0.05
SHMT2-209ENST00000553949 CSF1RP07333 972 aa15.35■□□□□ 0.05
SHMT2-209ENST00000553949 SRGNP10124 158 aa15.35■□□□□ 0.05
SHMT2-209ENST00000553949 DPEP1P16444 411 aa15.35■□□□□ 0.05
SHMT2-209ENST00000553949 CHRNA5P30532 468 aa15.35■□□□□ 0.05
SHMT2-209ENST00000553949 CCDC152Q4G0S7 254 aa15.35■□□□□ 0.05
SHMT2-209ENST00000553949 TTLL11Q8NHH1 800 aa15.35■□□□□ 0.05
SHMT2-209ENST00000553949 RPGRQ92834 1020 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms