RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-209	ENST00000553889	XRCC6	P12956	609 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	HSPA2	P54652	639 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	AIMP1	Q12904	312 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	NECTIN1	Q15223	517 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	NBPF14	Q5TI25	921 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	NBPF10	Q6P3W6	841 aa	Known RBP	11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	AACS	Q86V21	672 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	NBPF15	Q8N660	670 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	CCDC191	Q8NCU4	936 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	ZSWIM6	Q9HCJ5	1215 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	DIAPH3	Q9NSV4	1193 aa		11.15	□□□□□ -0.62
PRKCH-209	ENST00000553889	CCDC171	Q6TFL3	1326 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	ZNF445	P59923	1031 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	EPHA10	Q5JZY3	1008 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	VPS53	Q5VIR6	699 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	USPL1	Q5W0Q7	1092 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	ZGPAT	Q8N5A5	531 aa	Known RBP	11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	DISP2	A7MBM2	1401 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	MED23	Q9ULK4	1368 aa		11.14	□□□□□ -0.63
PRKCH-209	ENST00000553889	MYL6B	P14649	208 aa		11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	FOXO4	P98177	505 aa		11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	TOM1L2	Q6ZVM7	507 aa		11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	PLA2G12B	Q9BX93	195 aa		11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	HMG20B	Q9P0W2	317 aa		11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	LIMCH1	Q9UPQ0	1083 aa		11.13	□□□□□ -0.63
PRKCH-209	ENST00000553889	AFDN	P55196	1824 aa	Known RBP	11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	KDM4F	A0A1W2PPD8	638 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	CIAO1	O76071	339 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	MBD3	O95983	291 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	PSMA5	P28066	241 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	TNNI3K	Q59H18	835 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	RASEF	Q8IZ41	740 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	FAM43A	Q8N2R8	423 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	TMEM87A	Q8NBN3	555 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	ISCA1	Q9BUE6	129 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	CWC25	Q9NXE8	425 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	FPGT-TNNI3K	V9GXZ4	949 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	TJP1	Q07157	1748 aa		11.12	□□□□□ -0.63
PRKCH-209	ENST00000553889	WDR33	Q9C0J8	1336 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889		A0A087WZG4	1122 aa		11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	CWC27	Q6UX04	472 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	GRPEL1	Q9HAV7	217 aa		11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	FOXD4L1	Q9NU39	408 aa		11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	BRPF3	Q9ULD4	1205 aa		11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	DDX49	Q9Y6V7	483 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	SPEF2	Q9C093	1822 aa		11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	PLCH1	Q4KWH8	1693 aa		11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	COL14A1	Q05707	1796 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-209	ENST00000553889	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	ZKSCAN1	P17029	563 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	IL15	P40933	162 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	RNF20	Q5VTR2	975 aa		11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	UBE3B	Q7Z3V4	1068 aa		11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	HAUS7	Q99871	368 aa		11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	DBNL	Q9UJU6	430 aa	Known RBP	11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	CYP46A1	Q9Y6A2	500 aa		11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	PALLD	Q8WX93	1383 aa		11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	ABCC12	Q96J65	1359 aa		11.1	□□□□□ -0.63
PRKCH-209	ENST00000553889	TOGARAM1	Q9Y4F4	1720 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	MAP4K4	O95819	1239 aa	Predicted RBP	11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	AK2	P54819	239 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	PTH1R	Q03431	593 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	NMI	Q13287	307 aa	Predicted RBP	11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	PKP1	Q13835	747 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	KRT32	Q14532	448 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	ANKRD1	Q15327	319 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	RUFY3	Q7L099	469 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	ATG9A	Q7Z3C6	839 aa		11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	UPF3B	Q9BZI7	483 aa	Known RBP	11.09	□□□□□ -0.63
PRKCH-209	ENST00000553889	TAF5L	O75529	589 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	PCCA	P05165	728 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	TFCP2	Q12800	502 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	TCIRG1	Q13488	830 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	CREB3L3	Q68CJ9	461 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	MCTP1	Q6DN14	999 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	LMBR1L	Q6UX01	489 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	TTLL7	Q6ZT98	887 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	GAS2L3	Q86XJ1	694 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	TLR7	Q9NYK1	1049 aa	Known RBP	11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	RBM8A	Q9Y5S9	174 aa	Known RBP	11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	SH3TC1	Q8TE82	1336 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	CDHR2	Q9BYE9	1310 aa		11.08	□□□□□ -0.64
PRKCH-209	ENST00000553889	EYA2	O00167	538 aa		11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	SLC27A2	O14975	620 aa		11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	CSF1R	P07333	972 aa		11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	KBTBD3	Q8NAB2	608 aa		11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	PPP1R9B	Q96SB3	815 aa		11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	GZF1	Q9H116	711 aa	Predicted RBP	11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	HELLS	Q9NRZ9	838 aa		11.07	□□□□□ -0.64
PRKCH-209	ENST00000553889	PDRG1	Q9NUG6	133 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms