RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 USP47Q96K76 1375 aa9.09□□□□□ -0.95
VIPAS39-205ENST00000553691 HSPA6P17066 643 aa9.08□□□□□ -0.96
VIPAS39-205ENST00000553691 PRELPP51888 382 aa9.08□□□□□ -0.96
VIPAS39-205ENST00000553691 NLRP13Q86W25 1043 aa9.08□□□□□ -0.96
VIPAS39-205ENST00000553691 SLC12A5Q9H2X9 1139 aa9.08□□□□□ -0.96
VIPAS39-205ENST00000553691 STK32BQ9NY57 414 aa9.08□□□□□ -0.96
VIPAS39-205ENST00000553691 PARP4Q9UKK3 1724 aaKnown RBP9.08□□□□□ -0.96
VIPAS39-205ENST00000553691 TTC21AQ8NDW8 1320 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 OVOS2A0A0J9YW53 1432 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 OVOS2Q6IE36 1432 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 ABCC6O95255 1503 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 RPIAP49247 311 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 QPCTQ16769 361 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 AATKQ6ZMQ8 1374 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 KTN1Q86UP2 1357 aaKnown RBP9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 SBF2Q86WG5 1849 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 LTN1O94822 1766 aa9.07□□□□□ -0.96
VIPAS39-205ENST00000553691 EDC4Q6P2E9 1401 aaKnown RBP9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 LRRC37A3O60309 1634 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 PEAK1Q9H792 1746 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 CFAP99D6REC4 459 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 PLSCR1O15162 318 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 NEUROD2Q15784 382 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 LARP1Q6PKG0 1096 aaKnown RBP9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 ARHGEF25Q86VW2 580 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 TSC1Q92574 1164 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 ARXQ96QS3 562 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 NUDT12Q9BQG2 462 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 TIMELESSQ9UNS1 1208 aa9.06□□□□□ -0.96
VIPAS39-205ENST00000553691 NRG2O14511 850 aaPredicted RBP9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 CD2BP2O95400 341 aaKnown RBP9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 CLK2P49760 499 aaKnown RBP9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 COL13A1Q5TAT6 717 aaPredicted RBP9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 PTCRAQ6ISU1 281 aaPredicted RBP9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 NME9Q86XW9 330 aa9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 TCP11L2Q8N4U5 519 aa9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 MTFR1LQ9H019 292 aa9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 ZBTB3Q9H5J0 574 aa9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 WDR90Q96KV7 1748 aa9.05□□□□□ -0.96
VIPAS39-205ENST00000553691 PCNTO95613 3336 aa9.04□□□□□ -0.96
VIPAS39-205ENST00000553691 GDF9O60383 454 aa9.04□□□□□ -0.96
VIPAS39-205ENST00000553691 TRIM32Q13049 653 aa9.04□□□□□ -0.96
VIPAS39-205ENST00000553691 PDGFDQ9GZP0 370 aaPredicted RBP9.04□□□□□ -0.96
VIPAS39-205ENST00000553691 PKD2L1Q9P0L9 805 aa9.04□□□□□ -0.96
VIPAS39-205ENST00000553691 CRB1P82279 1406 aa9.04□□□□□ -0.96
VIPAS39-205ENST00000553691 ANKRD36BQ8N2N9 1353 aa9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 PRKCSHP14314 528 aaPredicted RBP9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 GJA5P36382 358 aa9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 LAPTM4AQ15012 233 aa9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 RTL5Q5HYW3 569 aaPredicted RBP9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 TNS4Q8IZW8 715 aa9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 THRAP3Q9Y2W1 955 aaKnown RBP9.03□□□□□ -0.96
VIPAS39-205ENST00000553691 SPDYE5A6NIY4 337 aa9.02□□□□□ -0.97
VIPAS39-205ENST00000553691 LCE2BO14633 110 aa9.02□□□□□ -0.97
VIPAS39-205ENST00000553691 SLC15A2Q16348 729 aa9.02□□□□□ -0.97
VIPAS39-205ENST00000553691 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.02□□□□□ -0.97
VIPAS39-205ENST00000553691 RSPH6AQ9H0K4 717 aa9.02□□□□□ -0.97
VIPAS39-205ENST00000553691 KIF20BQ96Q89 1820 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 OVOS2A0A0G2JMS6 1433 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 GRIN3BO60391 1043 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 CCNYL3P0C7X3 344 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 KCNH5Q8NCM2 988 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 PROCA1Q8NCQ7 364 aaPredicted RBP9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 TMC1Q8TDI8 760 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 DDRGK1Q96HY6 314 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 WDR17Q8IZU2 1322 aa9.01□□□□□ -0.97
VIPAS39-205ENST00000553691 FAM208AQ9UK61 1670 aaKnown RBP9□□□□□ -0.97
VIPAS39-205ENST00000553691 LILRB3O75022 631 aa9□□□□□ -0.97
VIPAS39-205ENST00000553691 POLD1P28340 1107 aa9□□□□□ -0.97
VIPAS39-205ENST00000553691 DDB1Q16531 1140 aa9□□□□□ -0.97
VIPAS39-205ENST00000553691 PTPRNQ16849 979 aa9□□□□□ -0.97
VIPAS39-205ENST00000553691 PRPF38BQ5VTL8 546 aaKnown RBP9□□□□□ -0.97
VIPAS39-205ENST00000553691 HDGFL2Q7Z4V5 671 aaPredicted RBP9□□□□□ -0.97
VIPAS39-205ENST00000553691 RGPD2P0DJD1 1756 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 FAM187AA6NFU0 413 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 PER1O15534 1290 aaPredicted RBP8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 CTHP32929 405 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 BRPF1P55201 1214 aaPredicted RBP8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 TMF1P82094 1093 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 SKOR1P84550 965 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 PRR20EP86478 221 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 PRR20CP86479 221 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 PRR20DP86480 221 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 PRR20BP86481 221 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 PRR20AP86496 221 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 TXNRD1Q16881 649 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 LINC01559Q495D7 138 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 IL27Q8NEV9 243 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 CARD14Q9BXL6 1004 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 TERF2IPQ9NYB0 399 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 ANKRD26Q9UPS8 1709 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 MAP3K5Q99683 1374 aa8.99□□□□□ -0.97
VIPAS39-205ENST00000553691 ATP10DQ9P241 1426 aa8.98□□□□□ -0.97
VIPAS39-205ENST00000553691 FBLN1P23142 703 aa8.98□□□□□ -0.97
VIPAS39-205ENST00000553691 MAP10Q9P2G4 905 aa8.98□□□□□ -0.97
VIPAS39-205ENST00000553691 BCL9O00512 1426 aa8.97□□□□□ -0.97
VIPAS39-205ENST00000553691 ZBTB7CA1YPR0 619 aa8.97□□□□□ -0.97
VIPAS39-205ENST00000553691 FYB1O15117 783 aa8.97□□□□□ -0.97
VIPAS39-205ENST00000553691 SKIV2LQ15477 1246 aaKnown RBP8.97□□□□□ -0.97
VIPAS39-205ENST00000553691 SH3D19Q5HYK7 790 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms