RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-223ENST00000553686 SFI1A8K8P3 1242 aa9.69□□□□□ -0.86
ATXN3-223ENST00000553686 RFX1P22670 979 aa9.69□□□□□ -0.86
ATXN3-223ENST00000553686 MSX1P28360 303 aa9.69□□□□□ -0.86
ATXN3-223ENST00000553686 PLA2G4AP47712 749 aa9.69□□□□□ -0.86
ATXN3-223ENST00000553686 CABP1Q9NZU7 370 aa9.69□□□□□ -0.86
ATXN3-223ENST00000553686 SCHIP1Q9P0W5 487 aaPredicted RBP9.69□□□□□ -0.86
ATXN3-223ENST00000553686 USP3Q9Y6I4 520 aa9.69□□□□□ -0.86
ATXN3-223ENST00000553686 ALKQ9UM73 1620 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 LRRC7Q96NW7 1537 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 TNRQ92752 1358 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 DKK1O94907 266 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 CDCA8Q53HL2 280 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 MEX3CQ5U5Q3 659 aaKnown RBP9.68□□□□□ -0.86
ATXN3-223ENST00000553686 FOXR1Q6PIV2 292 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 SIX5Q8N196 739 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 ZNF837Q96EG3 531 aaPredicted RBP9.68□□□□□ -0.86
ATXN3-223ENST00000553686 CNTNAP3BQ96NU0 1288 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 CNTNAP3Q9BZ76 1288 aa9.68□□□□□ -0.86
ATXN3-223ENST00000553686 SAMD9Q5K651 1589 aa9.67□□□□□ -0.86
ATXN3-223ENST00000553686 CLIP1P30622 1438 aa9.67□□□□□ -0.86
ATXN3-223ENST00000553686 EPHA4P54764 986 aa9.67□□□□□ -0.86
ATXN3-223ENST00000553686 CRTC2Q53ET0 693 aaPredicted RBP9.67□□□□□ -0.86
ATXN3-223ENST00000553686 GTPBP3Q969Y2 492 aaKnown RBP9.67□□□□□ -0.86
ATXN3-223ENST00000553686 PARP3Q9Y6F1 533 aa9.67□□□□□ -0.86
ATXN3-223ENST00000553686 MED14O60244 1454 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 CSB-PGBD3P0DP91 1061 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 FOXK2Q01167 660 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 KRT76Q01546 638 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 PTK7Q13308 1070 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 RNFT1Q5M7Z0 435 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 TBCELQ5QJ74 424 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 SLC9A9Q8IVB4 645 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 ZNF295-AS1Q8N0V1 137 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 PGBD3Q8N328 593 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 NUCKS1Q9H1E3 243 aaKnown RBP9.66□□□□□ -0.86
ATXN3-223ENST00000553686 RUBCNLQ9H714 662 aa9.66□□□□□ -0.86
ATXN3-223ENST00000553686 JCADQ9P266 1359 aa9.65□□□□□ -0.86
ATXN3-223ENST00000553686 M0R2N6 131 aa9.65□□□□□ -0.86
ATXN3-223ENST00000553686 SEC13P55735 322 aa9.65□□□□□ -0.86
ATXN3-223ENST00000553686 TSEN2Q8NCE0 465 aaKnown RBP9.65□□□□□ -0.86
ATXN3-223ENST00000553686 VWDEQ8N2E2 1590 aa9.65□□□□□ -0.86
ATXN3-223ENST00000553686 GPR25O00155 361 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 DPYDQ12882 1025 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 ANKMY2Q8IV38 441 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 FAM135AQ9P2D6 1515 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 MROH2AA6NES4 1674 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 TROQ12816 1431 aaPredicted RBP9.64□□□□□ -0.87
ATXN3-223ENST00000553686 ABCA6Q8N139 1617 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 MYO3AQ8NEV4 1616 aa9.64□□□□□ -0.87
ATXN3-223ENST00000553686 CDK13Q14004 1512 aaKnown RBP9.63□□□□□ -0.87
ATXN3-223ENST00000553686 FAM196BA6NMK8 535 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L15C9J2P7 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L10C9JJH3 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L13C9JLJ4 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L12C9JPN9 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L11C9JVI0 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L21D6R901 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L18D6R9N7 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L22D6RA61 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L17D6RBQ6 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L19D6RCP7 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L20D6RJB6 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 NOS2P35228 1153 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 USP17L24Q0WX57 530 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 TEAD4Q15561 434 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 ZSCAN1Q8NBB4 408 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 C1orf216Q8TAB5 229 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 L3MBTL2Q969R5 705 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 TRERF1Q96PN7 1200 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 HINFPQ9BQA5 517 aa9.63□□□□□ -0.87
ATXN3-223ENST00000553686 ZNF142P52746 1687 aaPredicted RBP9.63□□□□□ -0.87
ATXN3-223ENST00000553686 DNMT1P26358 1616 aaKnown RBP9.63□□□□□ -0.87
ATXN3-223ENST00000553686 SPATA31A6Q5VVP1 1343 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 THBS1P07996 1170 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 HNRNPMP52272 730 aaKnown RBP eCLIP9.62□□□□□ -0.87
ATXN3-223ENST00000553686 NBPF1Q3BBV0 1214 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 ARSJQ5FYB0 599 aaPredicted RBP9.62□□□□□ -0.87
ATXN3-223ENST00000553686 EFHC2Q5JST6 749 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 ZDHHC1Q8WTX9 485 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 CCDC97Q96F63 343 aaPredicted RBP9.62□□□□□ -0.87
ATXN3-223ENST00000553686 TSPAN10Q9H1Z9 355 aaPredicted RBP9.62□□□□□ -0.87
ATXN3-223ENST00000553686 SERPINA10Q9UK55 444 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 ZNF232Q9UNY5 417 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 MIA2Q96PC5 1412 aa9.62□□□□□ -0.87
ATXN3-223ENST00000553686 WASHC2CQ9Y4E1 1318 aa9.61□□□□□ -0.87
ATXN3-223ENST00000553686 A2MP01023 1474 aa9.61□□□□□ -0.87
ATXN3-223ENST00000553686 LORP23490 312 aaPredicted RBP9.61□□□□□ -0.87
ATXN3-223ENST00000553686 NEURL4Q96JN8 1562 aa9.61□□□□□ -0.87
ATXN3-223ENST00000553686 SERTM1A2A2V5 107 aa9.6□□□□□ -0.87
ATXN3-223ENST00000553686 TATP17735 454 aaPredicted RBP9.6□□□□□ -0.87
ATXN3-223ENST00000553686 ATP4AP20648 1035 aa9.6□□□□□ -0.87
ATXN3-223ENST00000553686 GAS6Q14393 721 aa9.6□□□□□ -0.87
ATXN3-223ENST00000553686 LBRQ14739 615 aaKnown RBP9.6□□□□□ -0.87
ATXN3-223ENST00000553686 CRISPLD1Q9H336 500 aa9.6□□□□□ -0.87
ATXN3-223ENST00000553686 ZDHHC3Q9NYG2 299 aa9.6□□□□□ -0.87
ATXN3-223ENST00000553686 ABCC1P33527 1531 aa9.6□□□□□ -0.87
ATXN3-223ENST00000553686 RNF17Q9BXT8 1623 aaKnown RBP9.6□□□□□ -0.87
ATXN3-223ENST00000553686 NLRP1Q9C000 1473 aa9.59□□□□□ -0.87
ATXN3-223ENST00000553686 A0A1W2PNR3 127 aa9.59□□□□□ -0.87
ATXN3-223ENST00000553686 LGR5O75473 907 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms