RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 PDZRN3Q9UPQ7 1066 aa23.71■■□□□ 1.39
SHMT2-206ENST00000553529 TAF1P21675 1872 aa23.7■■□□□ 1.39
SHMT2-206ENST00000553529 SNED1Q8TER0 1413 aa23.7■■□□□ 1.38
SHMT2-206ENST00000553529 IBTKQ9P2D0 1353 aaPredicted RBP23.7■■□□□ 1.38
SHMT2-206ENST00000553529 ATP5J2-PTCD1G3V325 749 aa23.7■■□□□ 1.38
SHMT2-206ENST00000553529 NLRP10Q86W26 655 aa23.7■■□□□ 1.38
SHMT2-206ENST00000553529 NYXQ9GZU5 481 aa23.7■■□□□ 1.38
SHMT2-206ENST00000553529 COL4A5P29400 1685 aa23.7■■□□□ 1.38
SHMT2-206ENST00000553529 HCLS1P14317 486 aaPredicted RBP23.69■■□□□ 1.38
SHMT2-206ENST00000553529 ZNF277Q9NRM2 450 aaPredicted RBP23.69■■□□□ 1.38
SHMT2-206ENST00000553529 DDX60Q8IY21 1712 aaKnown RBP23.68■■□□□ 1.38
SHMT2-206ENST00000553529 GNAI1P63096 354 aa23.68■■□□□ 1.38
SHMT2-206ENST00000553529 TCIRG1Q13488 830 aa23.68■■□□□ 1.38
SHMT2-206ENST00000553529 WWC1Q8IX03 1113 aa23.68■■□□□ 1.38
SHMT2-206ENST00000553529 UTP14AQ9BVJ6 771 aaKnown RBP23.68■■□□□ 1.38
SHMT2-206ENST00000553529 RTL5Q5HYW3 569 aaPredicted RBP23.67■■□□□ 1.38
SHMT2-206ENST00000553529 RIC1Q4ADV7 1423 aa23.67■■□□□ 1.38
SHMT2-206ENST00000553529 POTECB2RU33 542 aa23.66■■□□□ 1.38
SHMT2-206ENST00000553529 HOXB7P09629 217 aa23.66■■□□□ 1.38
SHMT2-206ENST00000553529 CCDC93Q567U6 631 aa23.66■■□□□ 1.38
SHMT2-206ENST00000553529 DBF4Q9UBU7 674 aaPredicted RBP23.66■■□□□ 1.38
SHMT2-206ENST00000553529 LTBP3Q9NS15 1303 aa23.65■■□□□ 1.38
SHMT2-206ENST00000553529 PARP10Q53GL7 1025 aa23.65■■□□□ 1.38
SHMT2-206ENST00000553529 PPP1R42Q7Z4L9 355 aa23.65■■□□□ 1.38
SHMT2-206ENST00000553529 FAM9BQ8IZU0 186 aa23.65■■□□□ 1.38
SHMT2-206ENST00000553529 RPGRQ92834 1020 aaKnown RBP23.65■■□□□ 1.38
SHMT2-206ENST00000553529 KDM2BQ8NHM5 1336 aa23.64■■□□□ 1.38
SHMT2-206ENST00000553529 GLTPD2A6NH11 291 aa23.64■■□□□ 1.37
SHMT2-206ENST00000553529 HTRA3P83110 453 aa23.64■■□□□ 1.37
SHMT2-206ENST00000553529 ANKRD13DQ6ZTN6 518 aa23.64■■□□□ 1.37
SHMT2-206ENST00000553529 PLBD2Q8NHP8 589 aa23.64■■□□□ 1.37
SHMT2-206ENST00000553529 JARID2Q92833 1246 aaPredicted RBP23.64■■□□□ 1.37
SHMT2-206ENST00000553529 SPINK5Q9NQ38 1064 aaPredicted RBP23.64■■□□□ 1.37
SHMT2-206ENST00000553529 ZNF541Q9H0D2 1346 aa23.63■■□□□ 1.37
SHMT2-206ENST00000553529 DDNO94850 711 aaPredicted RBP23.63■■□□□ 1.37
SHMT2-206ENST00000553529 TRMT112Q9UI30 125 aaKnown RBP23.63■■□□□ 1.37
SHMT2-206ENST00000553529 ABCC4O15439 1325 aa23.62■■□□□ 1.37
SHMT2-206ENST00000553529 TOMM70O94826 608 aa23.62■■□□□ 1.37
SHMT2-206ENST00000553529 HOXA10P31260 410 aaPredicted RBP23.62■■□□□ 1.37
SHMT2-206ENST00000553529 FKBP4Q02790 459 aaKnown RBP eCLIP23.62■■□□□ 1.37
SHMT2-206ENST00000553529 ISCA1Q9BUE6 129 aa23.62■■□□□ 1.37
SHMT2-206ENST00000553529 PPEF1O14829 653 aaPredicted RBP23.61■■□□□ 1.37
SHMT2-206ENST00000553529 HSPA6P17066 643 aa23.61■■□□□ 1.37
SHMT2-206ENST00000553529 SLC10A5Q5PT55 438 aa23.61■■□□□ 1.37
SHMT2-206ENST00000553529 FAM89AQ96GI7 184 aa23.61■■□□□ 1.37
SHMT2-206ENST00000553529 WDR90Q96KV7 1748 aa23.61■■□□□ 1.37
SHMT2-206ENST00000553529 ALDH1B1P30837 517 aa23.6■■□□□ 1.37
SHMT2-206ENST00000553529 CALD1Q05682 793 aaKnown RBP23.6■■□□□ 1.37
SHMT2-206ENST00000553529 CCDC27Q2M243 656 aa23.6■■□□□ 1.37
SHMT2-206ENST00000553529 G2E3Q7L622 706 aa23.6■■□□□ 1.37
SHMT2-206ENST00000553529 HYPKQ9NX55 129 aa23.6■■□□□ 1.37
SHMT2-206ENST00000553529 POTEIP0CG38 1075 aa23.59■■□□□ 1.37
SHMT2-206ENST00000553529 POTEJP0CG39 1038 aa23.59■■□□□ 1.37
SHMT2-206ENST00000553529 HSP90AB3PQ58FF7 597 aa23.59■■□□□ 1.37
SHMT2-206ENST00000553529 RBM17Q96I25 401 aaKnown RBP23.59■■□□□ 1.37
SHMT2-206ENST00000553529 NLRP3Q96P20 1036 aa23.59■■□□□ 1.37
SHMT2-206ENST00000553529 MYD88Q99836 296 aa23.59■■□□□ 1.37
SHMT2-206ENST00000553529 FANCIQ9NVI1 1328 aa23.59■■□□□ 1.37
SHMT2-206ENST00000553529 ZC3H4Q9UPT8 1303 aaKnown RBP23.59■■□□□ 1.37
SHMT2-206ENST00000553529 SOGA3Q5TF21 947 aa23.58■■□□□ 1.37
SHMT2-206ENST00000553529 SH3TC1Q8TE82 1336 aa23.58■■□□□ 1.36
SHMT2-206ENST00000553529 RIC3Q7Z5B4 369 aa23.57■■□□□ 1.36
SHMT2-206ENST00000553529 CRAMP1Q96RY5 1269 aa23.57■■□□□ 1.36
SHMT2-206ENST00000553529 IARSP41252 1262 aaKnown RBP23.56■■□□□ 1.36
SHMT2-206ENST00000553529 C16orf71Q8IYS4 520 aaPredicted RBP23.56■■□□□ 1.36
SHMT2-206ENST00000553529 CEP350Q5VT06 3117 aa23.55■■□□□ 1.36
SHMT2-206ENST00000553529 TWISTNBQ3B726 338 aaPredicted RBP23.55■■□□□ 1.36
SHMT2-206ENST00000553529 RBM46Q8TBY0 533 aaKnown RBP23.55■■□□□ 1.36
SHMT2-206ENST00000553529 GOLGA2Q08379 1002 aa23.54■■□□□ 1.36
SHMT2-206ENST00000553529 RTKN2Q8IZC4 609 aa23.54■■□□□ 1.36
SHMT2-206ENST00000553529 DUOX1Q9NRD9 1551 aa23.53■■□□□ 1.36
SHMT2-206ENST00000553529 CELF1Q92879 486 aaKnown RBP23.53■■□□□ 1.36
SHMT2-206ENST00000553529 MAP3K2Q9Y2U5 619 aa23.53■■□□□ 1.36
SHMT2-206ENST00000553529 VEGFAP15692 232 aaPredicted RBP23.52■■□□□ 1.36
SHMT2-206ENST00000553529 CCDC30Q5VVM6 783 aa23.52■■□□□ 1.36
SHMT2-206ENST00000553529 CCDC85AQ96PX6 553 aaPredicted RBP23.52■■□□□ 1.36
SHMT2-206ENST00000553529 LTBP1Q14766 1721 aa23.52■■□□□ 1.36
SHMT2-206ENST00000553529 EXOSC9Q06265 439 aaKnown RBP23.51■■□□□ 1.35
SHMT2-206ENST00000553529 DPY19L2Q6NUT2 758 aa23.51■■□□□ 1.35
SHMT2-206ENST00000553529 PSMD1Q99460 953 aa23.51■■□□□ 1.35
SHMT2-206ENST00000553529 ATP6V0A2Q9Y487 856 aa23.51■■□□□ 1.35
SHMT2-206ENST00000553529 IRS4O14654 1257 aaPredicted RBP23.5■■□□□ 1.35
SHMT2-206ENST00000553529 AOC3Q16853 763 aa23.5■■□□□ 1.35
SHMT2-206ENST00000553529 IL16Q14005 1332 aa23.5■■□□□ 1.35
SHMT2-206ENST00000553529 RNF123Q5XPI4 1314 aa23.5■■□□□ 1.35
SHMT2-206ENST00000553529 LRRC37AA6NMS7 1700 aa23.5■■□□□ 1.35
SHMT2-206ENST00000553529 PI4KAP2A4QPH2 592 aa23.49■■□□□ 1.35
SHMT2-206ENST00000553529 FZD9O00144 591 aa23.49■■□□□ 1.35
SHMT2-206ENST00000553529 IGKV5-2P06315 115 aa23.49■■□□□ 1.35
SHMT2-206ENST00000553529 CWF19L2Q2TBE0 894 aaKnown RBP23.49■■□□□ 1.35
SHMT2-206ENST00000553529 PI4KAP1Q8N8J0 262 aa23.49■■□□□ 1.35
SHMT2-206ENST00000553529 METTL22Q9BUU2 404 aaPredicted RBP23.49■■□□□ 1.35
SHMT2-206ENST00000553529 SEC31BQ9NQW1 1179 aa23.49■■□□□ 1.35
SHMT2-206ENST00000553529 GRAPQ13588 217 aa23.48■■□□□ 1.35
SHMT2-206ENST00000553529 GRAPLQ8TC17 118 aaPredicted RBP23.48■■□□□ 1.35
SHMT2-206ENST00000553529 GPR101Q96P66 508 aaPredicted RBP23.48■■□□□ 1.35
SHMT2-206ENST00000553529 VAMP4O75379 141 aa23.47■■□□□ 1.35
SHMT2-206ENST00000553529 SLC4A2P04920 1241 aa23.47■■□□□ 1.35
SHMT2-206ENST00000553529 DDX46Q7L014 1031 aaKnown RBP23.47■■□□□ 1.35
SHMT2-206ENST00000553529 TRIM28Q13263 835 aaKnown RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms