RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TBX22Q9Y458 520 aa20.85■□□□□ 0.93
SYNE3-202ENST00000553340 MRVI1Q9Y6F6 885 aa20.85■□□□□ 0.93
SYNE3-202ENST00000553340 SCAND2PQ9GZW5 306 aaPredicted RBP20.85■□□□□ 0.93
SYNE3-202ENST00000553340 DBF4Q9UBU7 674 aaPredicted RBP20.85■□□□□ 0.93
SYNE3-202ENST00000553340 MED1Q15648 1581 aaPredicted RBP20.84■□□□□ 0.93
SYNE3-202ENST00000553340 GOLGA6L4A6NEF3 574 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 LIG1P18858 919 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 CAMK4Q16566 473 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 TNMDQ9H2S6 317 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 PA2G4Q9UQ80 394 aaKnown RBP20.84■□□□□ 0.93
SYNE3-202ENST00000553340 FAM177BA6PVY3 158 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 KCNQ3O43525 872 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 TEFQ10587 303 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 RNF20Q5VTR2 975 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 FAM227BQ96M60 508 aa20.84■□□□□ 0.93
SYNE3-202ENST00000553340 MARF1Q9Y4F3 1742 aaKnown RBP20.84■□□□□ 0.93
SYNE3-202ENST00000553340 KDM3BQ7LBC6 1761 aa20.83■□□□□ 0.93
SYNE3-202ENST00000553340 RIOK3O14730 519 aaKnown RBP20.83■□□□□ 0.93
SYNE3-202ENST00000553340 SLC27A2O14975 620 aa20.83■□□□□ 0.93
SYNE3-202ENST00000553340 NMIQ13287 307 aaPredicted RBP20.83■□□□□ 0.93
SYNE3-202ENST00000553340 BLOC1S2Q6QNY1 142 aa20.83■□□□□ 0.93
SYNE3-202ENST00000553340 BTBD11A6QL63 1104 aa20.83■□□□□ 0.92
SYNE3-202ENST00000553340 MAP3K2Q9Y2U5 619 aa20.83■□□□□ 0.92
SYNE3-202ENST00000553340 ANKARQ7Z5J8 1434 aa20.83■□□□□ 0.92
SYNE3-202ENST00000553340 PPP4R3BQ5MIZ7 849 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 FAM173BQ6P4H8 233 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 LUZP1Q86V48 1076 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 PRDM10Q9NQV6 1147 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 PTGS1P23219 599 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 SNRKQ9NRH2 765 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 DDX19AQ9NUU7 478 aaKnown RBP20.82■□□□□ 0.92
SYNE3-202ENST00000553340 DACT1Q9NYF0 836 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 NPHP3Q7Z494 1330 aa20.82■□□□□ 0.92
SYNE3-202ENST00000553340 SPATA32Q96LK8 384 aa20.81■□□□□ 0.92
SYNE3-202ENST00000553340 USP54Q70EL1 1684 aa20.81■□□□□ 0.92
SYNE3-202ENST00000553340 ANO6Q4KMQ2 910 aa20.8■□□□□ 0.92
SYNE3-202ENST00000553340 KSR2Q6VAB6 950 aa20.8■□□□□ 0.92
SYNE3-202ENST00000553340 CKAP2LQ8IYA6 745 aa20.8■□□□□ 0.92
SYNE3-202ENST00000553340 PDCL2Q8N4E4 241 aa20.8■□□□□ 0.92
SYNE3-202ENST00000553340 ALDH8A1Q9H2A2 487 aaPredicted RBP20.8■□□□□ 0.92
SYNE3-202ENST00000553340 C14orf37Q86TY3 774 aa20.8■□□□□ 0.92
SYNE3-202ENST00000553340 RPS6KB1P23443 525 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 G3BP1Q13283 466 aaKnown RBP eCLIP20.79■□□□□ 0.92
SYNE3-202ENST00000553340 NBPF6Q5VWK0 638 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 IP6K1Q92551 441 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 NBPF4Q96M43 638 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 CBX8Q9HC52 389 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 ADGRL3Q9HAR2 1447 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 UTP14CQ5TAP6 766 aaKnown RBP20.79■□□□□ 0.92
SYNE3-202ENST00000553340 DRC7Q8IY82 874 aa20.79■□□□□ 0.92
SYNE3-202ENST00000553340 EAF2Q96CJ1 260 aaPredicted RBP20.79■□□□□ 0.92
SYNE3-202ENST00000553340 CTIFO43310 598 aaKnown RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 CBX1P83916 185 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 AKAP4Q5JQC9 854 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 CCDC186Q7Z3E2 898 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 TCEANC2Q96MN5 208 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 FSD1Q9BTV5 496 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 TFIP11Q9UBB9 837 aaKnown RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 SASH1O94885 1247 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 DMTNQ08495 405 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 CWF19L2Q2TBE0 894 aaKnown RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 LARP1Q6PKG0 1096 aaKnown RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 RBM43Q6ZSC3 357 aaKnown RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 LEO1Q8WVC0 666 aaPredicted RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 CCDC8Q9H0W5 538 aaPredicted RBP20.78■□□□□ 0.92
SYNE3-202ENST00000553340 CLSTN2Q9H4D0 955 aa20.78■□□□□ 0.92
SYNE3-202ENST00000553340 A0A0D9SFI3 127 aa20.77■□□□□ 0.92
SYNE3-202ENST00000553340 ZSCAN20P17040 1043 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-202ENST00000553340 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-202ENST00000553340 TRIM5Q9C035 493 aa20.77■□□□□ 0.92
SYNE3-202ENST00000553340 HMG20BQ9P0W2 317 aa20.77■□□□□ 0.92
SYNE3-202ENST00000553340 COL9A3Q14050 684 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-202ENST00000553340 ZNF530Q6P9A1 599 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-202ENST00000553340 ANKRD7Q92527 254 aa20.77■□□□□ 0.92
SYNE3-202ENST00000553340 NPHP4O75161 1426 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-202ENST00000553340 TOB2Q14106 344 aaPredicted RBP20.76■□□□□ 0.91
SYNE3-202ENST00000553340 GRM8O00222 908 aa20.76■□□□□ 0.91
SYNE3-202ENST00000553340 ATP2B3Q16720 1220 aa20.76■□□□□ 0.91
SYNE3-202ENST00000553340 BOLA2Q9H3K6 86 aa20.76■□□□□ 0.91
SYNE3-202ENST00000553340 LTN1O94822 1766 aa20.76■□□□□ 0.91
SYNE3-202ENST00000553340 ZNF75DP51815 510 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 MPRIPQ6WCQ1 1025 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 PLA2G4DQ86XP0 818 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 LINS1Q8NG48 757 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 TDRD7Q8NHU6 1098 aaKnown RBP20.75■□□□□ 0.91
SYNE3-202ENST00000553340 PROSER3Q2NL68 480 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 TSGA10IPQ3SY00 556 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 PLEKHO1Q53GL0 409 aaPredicted RBP20.75■□□□□ 0.91
SYNE3-202ENST00000553340 SUCLG2Q96I99 432 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 MED23Q9ULK4 1368 aa20.75■□□□□ 0.91
SYNE3-202ENST00000553340 STK3Q13188 491 aa20.74■□□□□ 0.91
SYNE3-202ENST00000553340 BICD2Q8TD16 824 aa20.74■□□□□ 0.91
SYNE3-202ENST00000553340 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.74■□□□□ 0.91
SYNE3-202ENST00000553340 SLIT1O75093 1534 aa20.74■□□□□ 0.91
SYNE3-202ENST00000553340 GIGYF1O75420 1035 aaPredicted RBP20.74■□□□□ 0.91
SYNE3-202ENST00000553340 ZNF165P49910 485 aa20.74■□□□□ 0.91
SYNE3-202ENST00000553340 BICC1Q9H694 974 aaKnown RBP20.74■□□□□ 0.91
SYNE3-202ENST00000553340 LRMPQ12912 555 aa20.74■□□□□ 0.91
SYNE3-202ENST00000553340 TLR7Q9NYK1 1049 aaKnown RBP20.74■□□□□ 0.91
SYNE3-202ENST00000553340 ARHGAP23Q9P227 1491 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms