RNA–Protein interactions for RNA: ENST00000553237.5

CDK4-215, Transcript of cyclin dependent kinase 4, humanhuman

TSL 2

Gene CDK4, Length 952 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-215ENST00000553237 RPGRQ92834 1020 aaKnown RBP20.65■□□□□ 0.9
CDK4-215ENST00000553237 IFT57Q9NWB7 429 aa20.65■□□□□ 0.9
CDK4-215ENST00000553237 ELL2O00472 640 aaPredicted RBP20.64■□□□□ 0.89
CDK4-215ENST00000553237 GNAI1P63096 354 aa20.64■□□□□ 0.89
CDK4-215ENST00000553237 HSP90AB3PQ58FF7 597 aa20.64■□□□□ 0.89
CDK4-215ENST00000553237 DPY19L2Q6NUT2 758 aa20.64■□□□□ 0.89
CDK4-215ENST00000553237 RBM46Q8TBY0 533 aaKnown RBP20.64■□□□□ 0.89
CDK4-215ENST00000553237 ZNF428Q96B54 188 aa20.64■□□□□ 0.89
CDK4-215ENST00000553237 TCIRG1Q13488 830 aa20.63■□□□□ 0.89
CDK4-215ENST00000553237 NLRP10Q86W26 655 aa20.63■□□□□ 0.89
CDK4-215ENST00000553237 MRS2Q9HD23 443 aa20.63■□□□□ 0.89
CDK4-215ENST00000553237 ZNF277Q9NRM2 450 aaPredicted RBP20.63■□□□□ 0.89
CDK4-215ENST00000553237 DBF4Q9UBU7 674 aaPredicted RBP20.63■□□□□ 0.89
CDK4-215ENST00000553237 ARFGEF2Q9Y6D5 1785 aa20.62■□□□□ 0.89
CDK4-215ENST00000553237 VEGFAP15692 232 aaPredicted RBP20.62■□□□□ 0.89
CDK4-215ENST00000553237 HOXA10P31260 410 aaPredicted RBP20.62■□□□□ 0.89
CDK4-215ENST00000553237 FKBP4Q02790 459 aaKnown RBP eCLIP20.62■□□□□ 0.89
CDK4-215ENST00000553237 RTKN2Q8IZC4 609 aa20.62■□□□□ 0.89
CDK4-215ENST00000553237 SYNE4Q8N205 404 aa20.62■□□□□ 0.89
CDK4-215ENST00000553237 NLRP3Q96P20 1036 aa20.62■□□□□ 0.89
CDK4-215ENST00000553237 TCERG1O14776 1098 aaKnown RBP20.61■□□□□ 0.89
CDK4-215ENST00000553237 ANKRD13DQ6ZTN6 518 aa20.61■□□□□ 0.89
CDK4-215ENST00000553237 RBM17Q96I25 401 aaKnown RBP20.61■□□□□ 0.89
CDK4-215ENST00000553237 TIAM2Q8IVF5 1701 aa20.61■□□□□ 0.89
CDK4-215ENST00000553237 HCLS1P14317 486 aaPredicted RBP20.6■□□□□ 0.89
CDK4-215ENST00000553237 SLC10A5Q5PT55 438 aa20.6■□□□□ 0.89
CDK4-215ENST00000553237 C8orf58Q8NAV2 365 aa20.6■□□□□ 0.89
CDK4-215ENST00000553237 PLBD2Q8NHP8 589 aa20.6■□□□□ 0.89
CDK4-215ENST00000553237 HYPKQ9NX55 129 aa20.6■□□□□ 0.89
CDK4-215ENST00000553237 TRMT112Q9UI30 125 aaKnown RBP20.6■□□□□ 0.89
CDK4-215ENST00000553237 RIC1Q4ADV7 1423 aa20.6■□□□□ 0.89
CDK4-215ENST00000553237 POTECB2RU33 542 aa20.59■□□□□ 0.89
CDK4-215ENST00000553237 DDNO94850 711 aaPredicted RBP20.59■□□□□ 0.89
CDK4-215ENST00000553237 SLC51AQ86UW1 340 aa20.59■□□□□ 0.89
CDK4-215ENST00000553237 CRAMP1Q96RY5 1269 aa20.59■□□□□ 0.89
CDK4-215ENST00000553237 ATP5J2-PTCD1G3V325 749 aa20.58■□□□□ 0.89
CDK4-215ENST00000553237 PPEF1O14829 653 aaPredicted RBP20.57■□□□□ 0.88
CDK4-215ENST00000553237 APLP1P51693 650 aa20.57■□□□□ 0.88
CDK4-215ENST00000553237 FSTL1Q12841 308 aa20.57■□□□□ 0.88
CDK4-215ENST00000553237 PHAXQ9H814 394 aaKnown RBP20.57■□□□□ 0.88
CDK4-215ENST00000553237 DICER1Q9UPY3 1922 aaKnown RBP20.57■□□□□ 0.88
CDK4-215ENST00000553237 SH3TC1Q8TE82 1336 aa20.56■□□□□ 0.88
CDK4-215ENST00000553237 IARSP41252 1262 aaKnown RBP20.56■□□□□ 0.88
CDK4-215ENST00000553237 CC2D2BQ6DHV5 1058 aa20.56■□□□□ 0.88
CDK4-215ENST00000553237 WWC1Q8IX03 1113 aa20.56■□□□□ 0.88
CDK4-215ENST00000553237 SMC1BQ8NDV3 1235 aa20.56■□□□□ 0.88
CDK4-215ENST00000553237 TSR2Q969E8 191 aaKnown RBP20.56■□□□□ 0.88
CDK4-215ENST00000553237 RNF123Q5XPI4 1314 aa20.55■□□□□ 0.88
CDK4-215ENST00000553237 CEP350Q5VT06 3117 aa20.55■□□□□ 0.88
CDK4-215ENST00000553237 TSPYL6Q8N831 410 aa20.55■□□□□ 0.88
CDK4-215ENST00000553237 ISCA1Q9BUE6 129 aa20.55■□□□□ 0.88
CDK4-215ENST00000553237 SALL2Q9Y467 1007 aaPredicted RBP20.55■□□□□ 0.88
CDK4-215ENST00000553237 CCDC27Q2M243 656 aa20.54■□□□□ 0.88
CDK4-215ENST00000553237 RIC3Q7Z5B4 369 aa20.54■□□□□ 0.88
CDK4-215ENST00000553237 PSMD1Q99460 953 aa20.54■□□□□ 0.88
CDK4-215ENST00000553237 ABCC4O15439 1325 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 HTRA3P83110 453 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 GOLGA2Q08379 1002 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 RTL5Q5HYW3 569 aaPredicted RBP20.53■□□□□ 0.88
CDK4-215ENST00000553237 FAM89AQ96GI7 184 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 ANKRD36CQ5JPF3 1778 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 SNED1Q8TER0 1413 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 ZNF541Q9H0D2 1346 aa20.53■□□□□ 0.88
CDK4-215ENST00000553237 CCDC30Q5VVM6 783 aa20.52■□□□□ 0.88
CDK4-215ENST00000553237 TMX4Q9H1E5 349 aaPredicted RBP20.52■□□□□ 0.88
CDK4-215ENST00000553237 WDR90Q96KV7 1748 aa20.52■□□□□ 0.88
CDK4-215ENST00000553237 DDX46Q7L014 1031 aaKnown RBP20.51■□□□□ 0.87
CDK4-215ENST00000553237 JDP2Q8WYK2 163 aa20.51■□□□□ 0.87
CDK4-215ENST00000553237 ATP6V0A2Q9Y487 856 aa20.51■□□□□ 0.87
CDK4-215ENST00000553237 FZD9O00144 591 aa20.5■□□□□ 0.87
CDK4-215ENST00000553237 BBOX1O75936 387 aa20.5■□□□□ 0.87
CDK4-215ENST00000553237 GRIPAP1Q4V328 841 aa20.5■□□□□ 0.87
CDK4-215ENST00000553237 TRIM28Q13263 835 aaKnown RBP20.49■□□□□ 0.87
CDK4-215ENST00000553237 LARGE2Q8N3Y3 721 aa20.49■□□□□ 0.87
CDK4-215ENST00000553237 MYD88Q99836 296 aa20.49■□□□□ 0.87
CDK4-215ENST00000553237 POTEIP0CG38 1075 aa20.48■□□□□ 0.87
CDK4-215ENST00000553237 POTEJP0CG39 1038 aa20.48■□□□□ 0.87
CDK4-215ENST00000553237 GRAPQ13588 217 aa20.48■□□□□ 0.87
CDK4-215ENST00000553237 FAM9BQ8IZU0 186 aa20.48■□□□□ 0.87
CDK4-215ENST00000553237 DNAJC5GQ8N7S2 189 aa20.48■□□□□ 0.87
CDK4-215ENST00000553237 GRAPLQ8TC17 118 aaPredicted RBP20.48■□□□□ 0.87
CDK4-215ENST00000553237 L3MBTL3Q96JM7 780 aaPredicted RBP20.48■□□□□ 0.87
CDK4-215ENST00000553237 CHMP4AQ9BY43 222 aa20.48■□□□□ 0.87
CDK4-215ENST00000553237 IQCA1LA6NCM1 817 aa20.47■□□□□ 0.87
CDK4-215ENST00000553237 IRS4O14654 1257 aaPredicted RBP20.47■□□□□ 0.87
CDK4-215ENST00000553237 TWISTNBQ3B726 338 aaPredicted RBP20.47■□□□□ 0.87
CDK4-215ENST00000553237 SP8Q8IXZ3 490 aa20.47■□□□□ 0.87
CDK4-215ENST00000553237 IL16Q14005 1332 aa20.47■□□□□ 0.87
CDK4-215ENST00000553237 PPIP5K2O43314 1243 aa20.46■□□□□ 0.87
CDK4-215ENST00000553237 DDX58O95786 925 aaKnown RBP20.46■□□□□ 0.87
CDK4-215ENST00000553237 EIF6P56537 245 aaKnown RBP20.46■□□□□ 0.87
CDK4-215ENST00000553237 NCBP3Q53F19 620 aaKnown RBP20.46■□□□□ 0.87
CDK4-215ENST00000553237 JARID2Q92833 1246 aaPredicted RBP20.46■□□□□ 0.87
CDK4-215ENST00000553237 TAF1DQ9H5J8 278 aaPredicted RBP20.46■□□□□ 0.87
CDK4-215ENST00000553237 GJA3Q9Y6H8 435 aa20.46■□□□□ 0.87
CDK4-215ENST00000553237 LAMB2P55268 1798 aa20.46■□□□□ 0.87
CDK4-215ENST00000553237 COL4A5P29400 1685 aa20.45■□□□□ 0.86
CDK4-215ENST00000553237 SF3B3Q15393 1217 aaKnown RBP20.45■□□□□ 0.86
CDK4-215ENST00000553237 AOC3Q16853 763 aa20.45■□□□□ 0.86
CDK4-215ENST00000553237 DPP8Q6V1X1 898 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms