RNA–Protein interactions for RNA: ENST00000551716.5

CACNB3-220, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 3

Gene CACNB3, Length 544 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-220ENST00000551716 VPS33BQ9H267 617 aa20.54■□□□□ 0.88
CACNB3-220ENST00000551716 ADARB2Q9NS39 739 aaKnown RBP20.54■□□□□ 0.88
CACNB3-220ENST00000551716 CACNA1SQ13698 1873 aa20.54■□□□□ 0.88
CACNB3-220ENST00000551716 PIP4K2AP48426 406 aaPredicted RBP20.53■□□□□ 0.88
CACNB3-220ENST00000551716 DGKZQ13574 1117 aa20.53■□□□□ 0.88
CACNB3-220ENST00000551716 NIM1KQ8IY84 436 aa20.53■□□□□ 0.88
CACNB3-220ENST00000551716 RPGRQ92834 1020 aaKnown RBP20.53■□□□□ 0.88
CACNB3-220ENST00000551716 TMX4Q9H1E5 349 aaPredicted RBP20.53■□□□□ 0.88
CACNB3-220ENST00000551716 CELF2O95319 508 aaKnown RBP20.52■□□□□ 0.88
CACNB3-220ENST00000551716 HOXA10P31260 410 aaPredicted RBP20.52■□□□□ 0.88
CACNB3-220ENST00000551716 GPRC5DQ9NZD1 345 aa20.51■□□□□ 0.87
CACNB3-220ENST00000551716 ZC3H15Q8WU90 426 aaKnown RBP20.5■□□□□ 0.87
CACNB3-220ENST00000551716 RBM17Q96I25 401 aaKnown RBP20.5■□□□□ 0.87
CACNB3-220ENST00000551716 SNED1Q8TER0 1413 aa20.5■□□□□ 0.87
CACNB3-220ENST00000551716 KIF7Q2M1P5 1343 aa20.5■□□□□ 0.87
CACNB3-220ENST00000551716 CLSPNQ9HAW4 1339 aa20.5■□□□□ 0.87
CACNB3-220ENST00000551716 BCORQ6W2J9 1755 aa20.49■□□□□ 0.87
CACNB3-220ENST00000551716 NBPF26B4DH59 902 aa20.49■□□□□ 0.87
CACNB3-220ENST00000551716 NOGQ13253 232 aa20.49■□□□□ 0.87
CACNB3-220ENST00000551716 NBPF10Q6P3W6 841 aaKnown RBP20.49■□□□□ 0.87
CACNB3-220ENST00000551716 NBPF15Q8N660 670 aa20.49■□□□□ 0.87
CACNB3-220ENST00000551716 RTF1Q92541 710 aaKnown RBP20.49■□□□□ 0.87
CACNB3-220ENST00000551716 CRAMP1Q96RY5 1269 aa20.49■□□□□ 0.87
CACNB3-220ENST00000551716 PGAP2Q9UHJ9 254 aa20.49■□□□□ 0.87
CACNB3-220ENST00000551716 ERVV-1B6SEH8 477 aa20.48■□□□□ 0.87
CACNB3-220ENST00000551716 HLFQ16534 295 aa20.48■□□□□ 0.87
CACNB3-220ENST00000551716 PRAMEF22A3QJZ6 481 aa20.47■□□□□ 0.87
CACNB3-220ENST00000551716 CIAPIN1Q6FI81 312 aa20.47■□□□□ 0.87
CACNB3-220ENST00000551716 PPIP5K2O43314 1243 aa20.46■□□□□ 0.87
CACNB3-220ENST00000551716 CDC37L1Q7L3B6 337 aa20.46■□□□□ 0.87
CACNB3-220ENST00000551716 SUPT20HQ8NEM7 779 aa20.46■□□□□ 0.87
CACNB3-220ENST00000551716 ZNRF3Q9ULT6 936 aa20.46■□□□□ 0.87
CACNB3-220ENST00000551716 PPEF1O14829 653 aaPredicted RBP20.45■□□□□ 0.86
CACNB3-220ENST00000551716 CC2D1BQ5T0F9 858 aaKnown RBP20.45■□□□□ 0.86
CACNB3-220ENST00000551716 NUTM1Q86Y26 1132 aa20.45■□□□□ 0.86
CACNB3-220ENST00000551716 CDHR2Q9BYE9 1310 aa20.45■□□□□ 0.86
CACNB3-220ENST00000551716 PDE4DIPQ5VU43 2346 aa20.44■□□□□ 0.86
CACNB3-220ENST00000551716 SIPA1L3O60292 1781 aaPredicted RBP20.44■□□□□ 0.86
CACNB3-220ENST00000551716 PER1O15534 1290 aaPredicted RBP20.44■□□□□ 0.86
CACNB3-220ENST00000551716 PHACTR3Q96KR7 559 aa20.44■□□□□ 0.86
CACNB3-220ENST00000551716 GLIS2Q9BZE0 524 aaPredicted RBP20.44■□□□□ 0.86
CACNB3-220ENST00000551716 LTBP1Q14766 1721 aa20.44■□□□□ 0.86
CACNB3-220ENST00000551716 TRPM7Q96QT4 1865 aa20.43■□□□□ 0.86
CACNB3-220ENST00000551716 CXCL9Q07325 125 aa20.43■□□□□ 0.86
CACNB3-220ENST00000551716 TNIP1Q15025 636 aa20.43■□□□□ 0.86
CACNB3-220ENST00000551716 NPC1L1Q9UHC9 1359 aa20.43■□□□□ 0.86
CACNB3-220ENST00000551716 COL4A5P29400 1685 aa20.42■□□□□ 0.86
CACNB3-220ENST00000551716 HTATSF1O43719 755 aaKnown RBP20.42■□□□□ 0.86
CACNB3-220ENST00000551716 PRKAR2BP31323 418 aa20.42■□□□□ 0.86
CACNB3-220ENST00000551716 BCL2L13Q9BXK5 485 aa20.42■□□□□ 0.86
CACNB3-220ENST00000551716 SAGE1Q9NXZ1 904 aa20.42■□□□□ 0.86
CACNB3-220ENST00000551716 RIC1Q4ADV7 1423 aa20.42■□□□□ 0.86
CACNB3-220ENST00000551716 GMPSP49915 693 aaPredicted RBP20.41■□□□□ 0.86
CACNB3-220ENST00000551716 AOC3Q16853 763 aa20.41■□□□□ 0.86
CACNB3-220ENST00000551716 KIF6Q6ZMV9 814 aa20.41■□□□□ 0.86
CACNB3-220ENST00000551716 ZNF408Q9H9D4 720 aa20.41■□□□□ 0.86
CACNB3-220ENST00000551716 ATP6V0A2Q9Y487 856 aa20.41■□□□□ 0.86
CACNB3-220ENST00000551716 IBTKQ9P2D0 1353 aaPredicted RBP20.41■□□□□ 0.86
CACNB3-220ENST00000551716 TCERG1O14776 1098 aaKnown RBP20.4■□□□□ 0.86
CACNB3-220ENST00000551716 HUNKP57058 714 aa20.4■□□□□ 0.86
CACNB3-220ENST00000551716 TAF7Q15545 349 aaPredicted RBP20.4■□□□□ 0.86
CACNB3-220ENST00000551716 MAP3K15Q6ZN16 1313 aa20.4■□□□□ 0.86
CACNB3-220ENST00000551716 ABCC12Q96J65 1359 aa20.4■□□□□ 0.86
CACNB3-220ENST00000551716 NLRP3Q96P20 1036 aa20.4■□□□□ 0.86
CACNB3-220ENST00000551716 RTFDC1Q9BY42 306 aaPredicted RBP20.4■□□□□ 0.86
CACNB3-220ENST00000551716 NUDCQ9Y266 331 aa20.4■□□□□ 0.86
CACNB3-220ENST00000551716 H7C1D1 291 aa20.39■□□□□ 0.85
CACNB3-220ENST00000551716 PRPF38BQ5VTL8 546 aaKnown RBP20.39■□□□□ 0.85
CACNB3-220ENST00000551716 CCDC102AQ96A19 550 aa20.39■□□□□ 0.85
CACNB3-220ENST00000551716 CFAP53Q96M91 514 aa20.39■□□□□ 0.85
CACNB3-220ENST00000551716 RSPH6AQ9H0K4 717 aa20.39■□□□□ 0.85
CACNB3-220ENST00000551716 CASP8AP2Q9UKL3 1982 aa20.39■□□□□ 0.85
CACNB3-220ENST00000551716 BBOX1O75936 387 aa20.38■□□□□ 0.85
CACNB3-220ENST00000551716 MCM10Q7L590 875 aa20.38■□□□□ 0.85
CACNB3-220ENST00000551716 PPP1R42Q7Z4L9 355 aa20.38■□□□□ 0.85
CACNB3-220ENST00000551716 NGEFQ8N5V2 710 aa20.38■□□□□ 0.85
CACNB3-220ENST00000551716 TRIM26Q12899 539 aaPredicted RBP20.37■□□□□ 0.85
CACNB3-220ENST00000551716 SUSD4Q5VX71 490 aa20.37■□□□□ 0.85
CACNB3-220ENST00000551716 COL3A1P02461 1466 aaPredicted RBP20.37■□□□□ 0.85
CACNB3-220ENST00000551716 GPTP24298 496 aa20.36■□□□□ 0.85
CACNB3-220ENST00000551716 HIRAP54198 1017 aaPredicted RBP20.36■□□□□ 0.85
CACNB3-220ENST00000551716 PARP10Q53GL7 1025 aa20.36■□□□□ 0.85
CACNB3-220ENST00000551716 RGMBQ6NW40 437 aa20.36■□□□□ 0.85
CACNB3-220ENST00000551716 DPP8Q6V1X1 898 aaPredicted RBP20.36■□□□□ 0.85
CACNB3-220ENST00000551716 CNOT7Q9UIV1 285 aaKnown RBP20.36■□□□□ 0.85
CACNB3-220ENST00000551716 KIAA2012Q0VF49 1180 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 SLC10A5Q5PT55 438 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 USP48Q86UV5 1035 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 SP8Q8IXZ3 490 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 ZNF34Q8IZ26 560 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 C2orf69Q8N8R5 385 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 PNISRQ8TF01 805 aaKnown RBP20.35■□□□□ 0.85
CACNB3-220ENST00000551716 ZIC5Q96T25 663 aa20.35■□□□□ 0.85
CACNB3-220ENST00000551716 TNRC18O15417 2968 aaPredicted RBP20.34■□□□□ 0.85
CACNB3-220ENST00000551716 SOX10P56693 466 aa20.34■□□□□ 0.85
CACNB3-220ENST00000551716 REM2Q8IYK8 340 aaPredicted RBP20.34■□□□□ 0.85
CACNB3-220ENST00000551716 MPNDQ8N594 471 aa20.34■□□□□ 0.85
CACNB3-220ENST00000551716 RRP7AQ9Y3A4 280 aaKnown RBP20.34■□□□□ 0.85
CACNB3-220ENST00000551716 UBN2Q6ZU65 1347 aa20.33■□□□□ 0.85
CACNB3-220ENST00000551716 RAD17O75943 681 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms