RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 XAGE3Q8WTP9 111 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 SBF1O95248 1867 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 LAMB4A4D0S4 1761 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 AIMP1Q12904 312 aaKnown RBP14.13□□□□□ -0.15
VTI1BP3-201ENST00000550220 PROSER3Q2NL68 480 aa14.13□□□□□ -0.15
VTI1BP3-201ENST00000550220 SYNE4Q8N205 404 aa14.13□□□□□ -0.15
VTI1BP3-201ENST00000550220 JDP2Q8WYK2 163 aa14.13□□□□□ -0.15
VTI1BP3-201ENST00000550220 IFT57Q9NWB7 429 aa14.13□□□□□ -0.15
VTI1BP3-201ENST00000550220 HYPKQ9NX55 129 aa14.13□□□□□ -0.15
VTI1BP3-201ENST00000550220 POTECB2RU33 542 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 APAF1O14727 1248 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 IARSP41252 1262 aaKnown RBP14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 DUSP27Q5VZP5 1158 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 ANKRD13DQ6ZTN6 518 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 DNAJC5GQ8N7S2 189 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 PLBD2Q8NHP8 589 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 NECTIN2Q92692 538 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 VPS33BQ9H267 617 aa14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 ZNF277Q9NRM2 450 aaPredicted RBP14.12□□□□□ -0.15
VTI1BP3-201ENST00000550220 ABCC12Q96J65 1359 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 BBOX1O75936 387 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 DDNO94850 711 aaPredicted RBP14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 ANXA1P04083 346 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 ZNF853P0CG23 659 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 NLRP10Q86W26 655 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 L3MBTL3Q96JM7 780 aaPredicted RBP14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 CHPF2Q9P2E5 772 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 TRMT112Q9UI30 125 aaKnown RBP14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 SLX4Q8IY92 1834 aa14.11□□□□□ -0.15
VTI1BP3-201ENST00000550220 PPEF1O14829 653 aaPredicted RBP14.1□□□□□ -0.15
VTI1BP3-201ENST00000550220 MBIPQ9NS73 344 aa14.1□□□□□ -0.15
VTI1BP3-201ENST00000550220 TNRC6CQ9HCJ0 1690 aaKnown RBP14.1□□□□□ -0.15
VTI1BP3-201ENST00000550220 SH3TC1Q8TE82 1336 aa14.1□□□□□ -0.15
VTI1BP3-201ENST00000550220 CEP350Q5VT06 3117 aa14.1□□□□□ -0.15
VTI1BP3-201ENST00000550220 COL11A2P13942 1736 aaPredicted RBP14.1□□□□□ -0.15
VTI1BP3-201ENST00000550220 FZD9O00144 591 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 HSP90B1P14625 803 aaKnown RBP14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 KRT24Q2M2I5 525 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 CHADLQ6NUI6 762 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 DDX46Q7L014 1031 aaKnown RBP14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 SUPT20HQ8NEM7 779 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 KLRG1Q96E93 195 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 ATP6V0A2Q9Y487 856 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 FER1L6Q2WGJ9 1857 aa14.09□□□□□ -0.15
VTI1BP3-201ENST00000550220 EIF6P56537 245 aaKnown RBP14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 TRIM28Q13263 835 aaKnown RBP14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 NCBP3Q53F19 620 aaKnown RBP14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 OLFM4Q6UX06 510 aa14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 TMC4Q7Z404 712 aa14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 PNMA8AQ86V59 439 aaPredicted RBP14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 GPC2Q8N158 579 aa14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 HACL1Q9UJ83 578 aa14.08□□□□□ -0.16
VTI1BP3-201ENST00000550220 GOLGA2Q08379 1002 aa14.07□□□□□ -0.16
VTI1BP3-201ENST00000550220 CCDC27Q2M243 656 aa14.07□□□□□ -0.16
VTI1BP3-201ENST00000550220 LDHDQ86WU2 507 aa14.07□□□□□ -0.16
VTI1BP3-201ENST00000550220 SP8Q8IXZ3 490 aa14.07□□□□□ -0.16
VTI1BP3-201ENST00000550220 LARGE2Q8N3Y3 721 aa14.07□□□□□ -0.16
VTI1BP3-201ENST00000550220 ANP32CO43423 234 aa14.06□□□□□ -0.16
VTI1BP3-201ENST00000550220 RIC3Q7Z5B4 369 aa14.06□□□□□ -0.16
VTI1BP3-201ENST00000550220 ISCA1Q9BUE6 129 aa14.06□□□□□ -0.16
VTI1BP3-201ENST00000550220 TAF1DQ9H5J8 278 aaPredicted RBP14.06□□□□□ -0.16
VTI1BP3-201ENST00000550220 WDR90Q96KV7 1748 aa14.06□□□□□ -0.16
VTI1BP3-201ENST00000550220 NUP98P52948 1817 aa14.06□□□□□ -0.16
VTI1BP3-201ENST00000550220 ARFGEF2Q9Y6D5 1785 aa14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 ZNF316A6NFI3 1004 aaPredicted RBP14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 DDX58O95786 925 aaKnown RBP14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 HCLS1P14317 486 aaPredicted RBP14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 CCDC30Q5VVM6 783 aa14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 C3orf67Q6ZVT6 689 aa14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 JMYQ8N9B5 988 aa14.05□□□□□ -0.16
VTI1BP3-201ENST00000550220 TCERG1O14776 1098 aaKnown RBP14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 LMOD1P29536 600 aaPredicted RBP14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 GRAPQ13588 217 aa14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 SF3B3Q15393 1217 aaKnown RBP14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 DPP8Q6V1X1 898 aaPredicted RBP14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 NIM1KQ8IY84 436 aa14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 MPNDQ8N594 471 aa14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 GRAPLQ8TC17 118 aaPredicted RBP14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 RTFDC1Q9BY42 306 aaPredicted RBP14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 ABCC4O15439 1325 aa14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 ZNF541Q9H0D2 1346 aa14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 SNED1Q8TER0 1413 aa14.04□□□□□ -0.16
VTI1BP3-201ENST00000550220 ELL2O00472 640 aaPredicted RBP14.03□□□□□ -0.16
VTI1BP3-201ENST00000550220 PPIP5K2O43314 1243 aa14.03□□□□□ -0.16
VTI1BP3-201ENST00000550220 EPHX2P34913 555 aa14.03□□□□□ -0.16
VTI1BP3-201ENST00000550220 CREBZFQ9NS37 354 aa14.03□□□□□ -0.16
VTI1BP3-201ENST00000550220 DICER1Q9UPY3 1922 aaKnown RBP14.03□□□□□ -0.16
VTI1BP3-201ENST00000550220 TIAM2Q8IVF5 1701 aa14.02□□□□□ -0.16
VTI1BP3-201ENST00000550220 ATP5J2-PTCD1G3V325 749 aa14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 HTRA3P83110 453 aa14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 ZBTB38Q8NAP3 1195 aaPredicted RBP14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 CCDC191Q8NCU4 936 aa14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 FAM89AQ96GI7 184 aa14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 ZNRF3Q9ULT6 936 aa14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 CLEC11AQ9Y240 323 aa14.02□□□□□ -0.17
VTI1BP3-201ENST00000550220 CCDC88AQ3V6T2 1871 aa14.01□□□□□ -0.17
VTI1BP3-201ENST00000550220 IL16Q14005 1332 aa14.01□□□□□ -0.17
VTI1BP3-201ENST00000550220 IRS4O14654 1257 aaPredicted RBP14.01□□□□□ -0.17
VTI1BP3-201ENST00000550220 EAPPQ56P03 285 aaPredicted RBP14.01□□□□□ -0.17
VTI1BP3-201ENST00000550220 WWC1Q8IX03 1113 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms