RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 EPHA4P54764 986 aa7.95□□□□□ -1.14
VPS29-205ENST00000548539 SH3PXD2AQ5TCZ1 1133 aa7.95□□□□□ -1.14
VPS29-205ENST00000548539 SSBP4Q9BWG4 385 aaPredicted RBP7.95□□□□□ -1.14
VPS29-205ENST00000548539 RNF112Q9ULX5 631 aa7.95□□□□□ -1.14
VPS29-205ENST00000548539 LZTS3O60299 673 aaPredicted RBP7.94□□□□□ -1.14
VPS29-205ENST00000548539 SKIP12755 728 aa7.94□□□□□ -1.14
VPS29-205ENST00000548539 C1orf53Q5VUE5 145 aa7.94□□□□□ -1.14
VPS29-205ENST00000548539 MCTP1Q6DN14 999 aa7.94□□□□□ -1.14
VPS29-205ENST00000548539 FMR1NBQ8N0W7 255 aaPredicted RBP7.94□□□□□ -1.14
VPS29-205ENST00000548539 HSH2DQ96JZ2 352 aa7.94□□□□□ -1.14
VPS29-205ENST00000548539 SLC6A14Q9UN76 642 aa7.94□□□□□ -1.14
VPS29-205ENST00000548539 CHMP3Q9Y3E7 222 aa7.94□□□□□ -1.14
VPS29-205ENST00000548539 A6NJR5 290 aa7.93□□□□□ -1.14
VPS29-205ENST00000548539 AFF1P51825 1210 aaKnown RBP7.93□□□□□ -1.14
VPS29-205ENST00000548539 HOMEZQ8IX15 550 aa7.93□□□□□ -1.14
VPS29-205ENST00000548539 DMRTC2Q8IXT2 367 aaPredicted RBP7.93□□□□□ -1.14
VPS29-205ENST00000548539 HCN4Q9Y3Q4 1203 aa7.93□□□□□ -1.14
VPS29-205ENST00000548539 RAD21O60216 631 aa7.92□□□□□ -1.14
VPS29-205ENST00000548539 TYRO3Q06418 890 aa7.92□□□□□ -1.14
VPS29-205ENST00000548539 RGS9O75916 674 aaPredicted RBP7.91□□□□□ -1.14
VPS29-205ENST00000548539 PSMA6P60900 246 aaKnown RBP7.91□□□□□ -1.14
VPS29-205ENST00000548539 PSAPL1Q6NUJ1 521 aa7.91□□□□□ -1.14
VPS29-205ENST00000548539 PROSER2Q86WR7 435 aaPredicted RBP7.91□□□□□ -1.14
VPS29-205ENST00000548539 ZNF280CQ8ND82 737 aa7.91□□□□□ -1.14
VPS29-205ENST00000548539 SUSD3Q96L08 255 aa7.91□□□□□ -1.14
VPS29-205ENST00000548539 PHACTR1Q9C0D0 580 aa7.91□□□□□ -1.14
VPS29-205ENST00000548539 PAX4O43316 350 aa7.9□□□□□ -1.14
VPS29-205ENST00000548539 NCOA4Q13772 614 aa7.9□□□□□ -1.14
VPS29-205ENST00000548539 WFDC12Q8WWY7 111 aa7.9□□□□□ -1.14
VPS29-205ENST00000548539 EFCC1Q9HA90 598 aa7.9□□□□□ -1.14
VPS29-205ENST00000548539 COG6Q9Y2V7 657 aa7.9□□□□□ -1.14
VPS29-205ENST00000548539 IREB2P48200 963 aaKnown RBP7.89□□□□□ -1.15
VPS29-205ENST00000548539 HIRAP54198 1017 aaPredicted RBP7.89□□□□□ -1.15
VPS29-205ENST00000548539 PCMTD2Q9NV79 361 aa7.89□□□□□ -1.15
VPS29-205ENST00000548539 DNAJB12Q9NXW2 375 aaKnown RBP7.89□□□□□ -1.15
VPS29-205ENST00000548539 ZNF777Q9ULD5 760 aaPredicted RBP7.89□□□□□ -1.15
VPS29-205ENST00000548539 TXKP42681 527 aa7.88□□□□□ -1.15
VPS29-205ENST00000548539 ILDR2Q71H61 639 aa7.88□□□□□ -1.15
VPS29-205ENST00000548539 DTWD1Q8N5C7 304 aa7.88□□□□□ -1.15
VPS29-205ENST00000548539 NFATC2IPQ8NCF5 419 aa7.88□□□□□ -1.15
VPS29-205ENST00000548539 PNMA5Q96PV4 448 aa7.88□□□□□ -1.15
VPS29-205ENST00000548539 TSPAN10Q9H1Z9 355 aaPredicted RBP7.88□□□□□ -1.15
VPS29-205ENST00000548539 COL17A1Q9UMD9 1497 aaPredicted RBP7.87□□□□□ -1.15
VPS29-205ENST00000548539 MSL1Q68DK7 614 aa7.87□□□□□ -1.15
VPS29-205ENST00000548539 FBXO11Q86XK2 927 aa7.87□□□□□ -1.15
VPS29-205ENST00000548539 BTLAQ7Z6A9 289 aa7.86□□□□□ -1.15
VPS29-205ENST00000548539 TRIM50Q86XT4 487 aa7.86□□□□□ -1.15
VPS29-205ENST00000548539 DEPDC4Q8N2C3 294 aa7.86□□□□□ -1.15
VPS29-205ENST00000548539 FNBP4Q8N3X1 1017 aaPredicted RBP7.86□□□□□ -1.15
VPS29-205ENST00000548539 TPCN2Q8NHX9 752 aa7.86□□□□□ -1.15
VPS29-205ENST00000548539 NAGPAQ9UK23 515 aa7.86□□□□□ -1.15
VPS29-205ENST00000548539 NOS3P29474 1203 aa7.85□□□□□ -1.15
VPS29-205ENST00000548539 HIF1AQ16665 826 aa7.85□□□□□ -1.15
VPS29-205ENST00000548539 POTEAQ6S8J7 498 aa7.85□□□□□ -1.15
VPS29-205ENST00000548539 IGF2-ASQ6U949 168 aa7.85□□□□□ -1.15
VPS29-205ENST00000548539 PRR23CQ6ZRP0 262 aa7.85□□□□□ -1.15
VPS29-205ENST00000548539 GSX2Q9BZM3 304 aa7.85□□□□□ -1.15
VPS29-205ENST00000548539 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.85□□□□□ -1.15
VPS29-205ENST00000548539 COBLO75128 1261 aa7.84□□□□□ -1.15
VPS29-205ENST00000548539 PCSK7Q16549 785 aa7.84□□□□□ -1.15
VPS29-205ENST00000548539 CCDC102BQ68D86 513 aa7.84□□□□□ -1.15
VPS29-205ENST00000548539 SLC51AQ86UW1 340 aa7.84□□□□□ -1.15
VPS29-205ENST00000548539 FAM35AQ86V20 835 aa7.84□□□□□ -1.15
VPS29-205ENST00000548539 CCDC82Q8N4S0 544 aa7.84□□□□□ -1.15
VPS29-205ENST00000548539 USP17L5A8MUK1 530 aa7.83□□□□□ -1.16
VPS29-205ENST00000548539 NFKB1P19838 968 aa7.83□□□□□ -1.16
VPS29-205ENST00000548539 ATP1A2P50993 1020 aa7.83□□□□□ -1.16
VPS29-205ENST00000548539 CCINQ13939 588 aa7.83□□□□□ -1.16
VPS29-205ENST00000548539 ALDH16A1Q8IZ83 802 aa7.83□□□□□ -1.16
VPS29-205ENST00000548539 MEGF10Q96KG7 1140 aa7.83□□□□□ -1.16
VPS29-205ENST00000548539 ZBTB7BO15156 539 aaPredicted RBP7.82□□□□□ -1.16
VPS29-205ENST00000548539 PPP1R12BO60237 982 aaPredicted RBP7.82□□□□□ -1.16
VPS29-205ENST00000548539 CPB1P15086 417 aa7.82□□□□□ -1.16
VPS29-205ENST00000548539 SSTR4P31391 388 aa7.82□□□□□ -1.16
VPS29-205ENST00000548539 WFDC8Q8IUA0 241 aa7.82□□□□□ -1.16
VPS29-205ENST00000548539 ALG2Q9H553 416 aa7.82□□□□□ -1.16
VPS29-205ENST00000548539 YBX3P16989 372 aaKnown RBP eCLIP7.81□□□□□ -1.161e-6■■□□□ 11.7
VPS29-205ENST00000548539 IRAK1P51617 712 aa7.81□□□□□ -1.16
VPS29-205ENST00000548539 FRRS1LQ9P0K9 344 aa7.81□□□□□ -1.16
VPS29-205ENST00000548539 KIAA1024Q9UPX6 916 aa7.81□□□□□ -1.16
VPS29-205ENST00000548539 FSTP19883 344 aa7.8□□□□□ -1.16
VPS29-205ENST00000548539 ELMSAN1Q6PJG2 1045 aa7.8□□□□□ -1.16
VPS29-205ENST00000548539 FMNL2Q96PY5 1086 aa7.8□□□□□ -1.16
VPS29-205ENST00000548539 LPIN3Q9BQK8 851 aa7.8□□□□□ -1.16
VPS29-205ENST00000548539 M0R2N6 131 aa7.79□□□□□ -1.16
VPS29-205ENST00000548539 GRIK5Q16478 980 aa7.79□□□□□ -1.16
VPS29-205ENST00000548539 PERM1Q5SV97 790 aa7.79□□□□□ -1.16
VPS29-205ENST00000548539 POM121CA8CG34 1229 aa7.78□□□□□ -1.16
VPS29-205ENST00000548539 CLDN10P78369 228 aa7.78□□□□□ -1.16
VPS29-205ENST00000548539 IER5Q5VY09 327 aa7.78□□□□□ -1.16
VPS29-205ENST00000548539 WWC1Q8IX03 1113 aa7.78□□□□□ -1.16
VPS29-205ENST00000548539 DZIP1LQ8IYY4 767 aaKnown RBP7.78□□□□□ -1.16
VPS29-205ENST00000548539 TSEN2Q8NCE0 465 aaKnown RBP7.78□□□□□ -1.16
VPS29-205ENST00000548539 NGLY1Q96IV0 654 aa7.78□□□□□ -1.16
VPS29-205ENST00000548539 AKTIPQ9H8T0 292 aa7.78□□□□□ -1.16
VPS29-205ENST00000548539 RBM19Q9Y4C8 960 aaKnown RBP7.78□□□□□ -1.16
VPS29-205ENST00000548539 C21orf2O43822 256 aa7.77□□□□□ -1.17
VPS29-205ENST00000548539 EPB42P16452 691 aa7.77□□□□□ -1.17
VPS29-205ENST00000548539 CD97P48960 835 aa7.77□□□□□ -1.17
VPS29-205ENST00000548539 LARGE2Q8N3Y3 721 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms