RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 PKN2Q16513 984 aaKnown RBP19.1■□□□□ 0.65
PTCH1-217ENST00000548420 VSIG10Q8N0Z9 540 aa19.1■□□□□ 0.65
PTCH1-217ENST00000548420 COL6A3P12111 3177 aa19.09■□□□□ 0.65
PTCH1-217ENST00000548420 POTEFA5A3E0 1075 aa19.08■□□□□ 0.64
PTCH1-217ENST00000548420 CDC37L1Q7L3B6 337 aa19.08■□□□□ 0.64
PTCH1-217ENST00000548420 USP48Q86UV5 1035 aa19.08■□□□□ 0.64
PTCH1-217ENST00000548420 ZNF330Q9Y3S2 320 aaPredicted RBP19.08■□□□□ 0.64
PTCH1-217ENST00000548420 UBR2Q8IWV8 1755 aa19.08■□□□□ 0.64
PTCH1-217ENST00000548420 MRC1P22897 1456 aa19.08■□□□□ 0.64
PTCH1-217ENST00000548420 LARGE2Q8N3Y3 721 aa19.07■□□□□ 0.64
PTCH1-217ENST00000548420 TRPM4Q8TD43 1214 aa19.07■□□□□ 0.64
PTCH1-217ENST00000548420 ZNF296Q8WUU4 475 aaPredicted RBP19.07■□□□□ 0.64
PTCH1-217ENST00000548420 CCDC102AQ96A19 550 aa19.06■□□□□ 0.64
PTCH1-217ENST00000548420 CEP290O15078 2479 aa19.06■□□□□ 0.64
PTCH1-217ENST00000548420 SHTN1A0MZ66 631 aa19.05■□□□□ 0.64
PTCH1-217ENST00000548420 ZNF157P51786 506 aaPredicted RBP19.05■□□□□ 0.64
PTCH1-217ENST00000548420 NBPF5PQ86XG9 351 aaPredicted RBP19.05■□□□□ 0.64
PTCH1-217ENST00000548420 HTTP42858 3142 aa19.05■□□□□ 0.64
PTCH1-217ENST00000548420 POLR2AP24928 1970 aaKnown RBP19.04■□□□□ 0.64
PTCH1-217ENST00000548420 KIAA0100Q14667 2235 aaKnown RBP19.04■□□□□ 0.64
PTCH1-217ENST00000548420 RNMTO43148 476 aaKnown RBP19.04■□□□□ 0.64
PTCH1-217ENST00000548420 STARD3NLO95772 234 aa19.04■□□□□ 0.64
PTCH1-217ENST00000548420 SLC10A3P09131 477 aa19.04■□□□□ 0.64
PTCH1-217ENST00000548420 GMPSP49915 693 aaPredicted RBP19.04■□□□□ 0.64
PTCH1-217ENST00000548420 CXCL9Q07325 125 aa19.04■□□□□ 0.64
PTCH1-217ENST00000548420 FBXO46Q6PJ61 603 aaPredicted RBP19.04■□□□□ 0.64
PTCH1-217ENST00000548420 ZC3H15Q8WU90 426 aaKnown RBP19.04■□□□□ 0.64
PTCH1-217ENST00000548420 IL6STP40189 918 aaPredicted RBP19.03■□□□□ 0.64
PTCH1-217ENST00000548420 HDAC9Q9UKV0 1011 aa19.03■□□□□ 0.64
PTCH1-217ENST00000548420 NPC1L1Q9UHC9 1359 aa19.03■□□□□ 0.64
PTCH1-217ENST00000548420 A1BGP04217 495 aa19.02■□□□□ 0.64
PTCH1-217ENST00000548420 ALDH1B1P30837 517 aa19.02■□□□□ 0.64
PTCH1-217ENST00000548420 TNNT2P45379 298 aaPredicted RBP19.02■□□□□ 0.64
PTCH1-217ENST00000548420 POLR3GLQ9BT43 218 aa19.02■□□□□ 0.64
PTCH1-217ENST00000548420 PANK3Q9H999 370 aa19.02■□□□□ 0.64
PTCH1-217ENST00000548420 GBA2Q9HCG7 927 aaPredicted RBP19.02■□□□□ 0.64
PTCH1-217ENST00000548420 TBC1D8O95759 1140 aa19.01■□□□□ 0.63
PTCH1-217ENST00000548420 PAPPA2Q9BXP8 1791 aa19.01■□□□□ 0.63
PTCH1-217ENST00000548420 KIF7Q2M1P5 1343 aa19■□□□□ 0.63
PTCH1-217ENST00000548420 NIM1KQ8IY84 436 aa19■□□□□ 0.63
PTCH1-217ENST00000548420 BRCA2P51587 3418 aa19■□□□□ 0.63
PTCH1-217ENST00000548420 OTUD5Q96G74 571 aa18.99■□□□□ 0.63
PTCH1-217ENST00000548420 ZNF496Q96IT1 587 aaPredicted RBP18.99■□□□□ 0.63
PTCH1-217ENST00000548420 CENPFP49454 3210 aa18.99■□□□□ 0.63
PTCH1-217ENST00000548420 AOC3Q16853 763 aa18.98■□□□□ 0.63
PTCH1-217ENST00000548420 SULT6B1Q6IMI4 303 aa18.98■□□□□ 0.63
PTCH1-217ENST00000548420 DZIP3Q86Y13 1208 aaKnown RBP18.98■□□□□ 0.63
PTCH1-217ENST00000548420 CC2D2BQ6DHV5 1058 aa18.97■□□□□ 0.63
PTCH1-217ENST00000548420 C2orf69Q8N8R5 385 aa18.97■□□□□ 0.63
PTCH1-217ENST00000548420 RANBP2P49792 3224 aaKnown RBP18.96■□□□□ 0.63
PTCH1-217ENST00000548420 FAM177BA6PVY3 158 aa18.96■□□□□ 0.63
PTCH1-217ENST00000548420 CRY2Q49AN0 593 aa18.96■□□□□ 0.63
PTCH1-217ENST00000548420 HEG1Q9ULI3 1381 aa18.95■□□□□ 0.62
PTCH1-217ENST00000548420 ADM5C9JUS6 153 aa18.95■□□□□ 0.62
PTCH1-217ENST00000548420 GPR25O00155 361 aa18.95■□□□□ 0.62
PTCH1-217ENST00000548420 PPIP5K2O43314 1243 aa18.95■□□□□ 0.62
PTCH1-217ENST00000548420 EN2P19622 333 aaPredicted RBP18.95■□□□□ 0.62
PTCH1-217ENST00000548420 PIP4K2AP48426 406 aaPredicted RBP18.95■□□□□ 0.62
PTCH1-217ENST00000548420 TPTE2Q6XPS3 522 aa18.95■□□□□ 0.62
PTCH1-217ENST00000548420 RASAL3Q86YV0 1011 aa18.95■□□□□ 0.62
PTCH1-217ENST00000548420 RBBP6Q7Z6E9 1792 aaKnown RBP18.95■□□□□ 0.62
PTCH1-217ENST00000548420 EGFRP00533 1210 aa18.94■□□□□ 0.62
PTCH1-217ENST00000548420 R3HDMLQ9H3Y0 253 aa18.94■□□□□ 0.62
PTCH1-217ENST00000548420 CNOT7Q9UIV1 285 aaKnown RBP18.94■□□□□ 0.62
PTCH1-217ENST00000548420 ZNRF3Q9ULT6 936 aa18.94■□□□□ 0.62
PTCH1-217ENST00000548420 PITPNM2Q9BZ72 1349 aa18.94■□□□□ 0.62
PTCH1-217ENST00000548420 TCERG1O14776 1098 aaKnown RBP18.93■□□□□ 0.62
PTCH1-217ENST00000548420 PER1O15534 1290 aaPredicted RBP18.93■□□□□ 0.62
PTCH1-217ENST00000548420 CLEC4GQ6UXB4 293 aa18.93■□□□□ 0.62
PTCH1-217ENST00000548420 KRT26Q7Z3Y9 468 aa18.93■□□□□ 0.62
PTCH1-217ENST00000548420 ABCC12Q96J65 1359 aa18.93■□□□□ 0.62
PTCH1-217ENST00000548420 SAMD7Q7Z3H4 446 aa18.92■□□□□ 0.62
PTCH1-217ENST00000548420 NIP7Q9Y221 180 aaKnown RBP eCLIP18.92■□□□□ 0.62
PTCH1-217ENST00000548420 CDHR2Q9BYE9 1310 aa18.92■□□□□ 0.62
PTCH1-217ENST00000548420 H0YGN5 161 aa18.91■□□□□ 0.62
PTCH1-217ENST00000548420 RAD17O75943 681 aa18.91■□□□□ 0.62
PTCH1-217ENST00000548420 REM2Q8IYK8 340 aaPredicted RBP18.91■□□□□ 0.62
PTCH1-217ENST00000548420 BCL2L13Q9BXK5 485 aa18.91■□□□□ 0.62
PTCH1-217ENST00000548420 MNX1P50219 401 aaPredicted RBP18.9■□□□□ 0.62
PTCH1-217ENST00000548420 AMER1Q5JTC6 1135 aaPredicted RBP18.9■□□□□ 0.62
PTCH1-217ENST00000548420 TEX13AQ9BXU3 409 aaPredicted RBP18.9■□□□□ 0.62
PTCH1-217ENST00000548420 HOXA10P31260 410 aaPredicted RBP18.89■□□□□ 0.61
PTCH1-217ENST00000548420 NOM1Q5C9Z4 860 aaKnown RBP18.89■□□□□ 0.61
PTCH1-217ENST00000548420 MICALL2Q8IY33 904 aa18.89■□□□□ 0.61
PTCH1-217ENST00000548420 TTC5Q8N0Z6 440 aa18.89■□□□□ 0.61
PTCH1-217ENST00000548420 KNSTRNQ9Y448 316 aa18.89■□□□□ 0.61
PTCH1-217ENST00000548420 GRIPAP1Q4V328 841 aa18.88■□□□□ 0.61
PTCH1-217ENST00000548420 YDJCA8MPS7 323 aa18.87■□□□□ 0.61
PTCH1-217ENST00000548420 INTS3Q68E01 1043 aaKnown RBP18.87■□□□□ 0.61
PTCH1-217ENST00000548420 ZNF790Q6PG37 636 aa18.87■□□□□ 0.61
PTCH1-217ENST00000548420 CHRDL2Q6WN34 429 aa18.87■□□□□ 0.61
PTCH1-217ENST00000548420 NUTM1Q86Y26 1132 aa18.87■□□□□ 0.61
PTCH1-217ENST00000548420 RBM27Q9P2N5 1060 aaKnown RBP18.87■□□□□ 0.61
PTCH1-217ENST00000548420 ZBTB12Q9Y330 459 aaPredicted RBP18.87■□□□□ 0.61
PTCH1-217ENST00000548420 H7C1D1 291 aa18.86■□□□□ 0.61
PTCH1-217ENST00000548420 PPEF1O14829 653 aaPredicted RBP18.86■□□□□ 0.61
PTCH1-217ENST00000548420 FKTNO75072 461 aa18.86■□□□□ 0.61
PTCH1-217ENST00000548420 IL13P35225 146 aa18.86■□□□□ 0.61
PTCH1-217ENST00000548420 HLFQ16534 295 aa18.86■□□□□ 0.61
PTCH1-217ENST00000548420 MTHFSDQ2M296 383 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms