RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 PI4KAP1Q8N8J0 262 aa20.58■□□□□ 0.88
CHMP1A-204ENST00000547687 HYPKQ9NX55 129 aa20.58■□□□□ 0.88
CHMP1A-204ENST00000547687 DAXXQ9UER7 740 aaPredicted RBP20.58■□□□□ 0.88
CHMP1A-204ENST00000547687 AFDNP55196 1824 aaKnown RBP20.57■□□□□ 0.88
CHMP1A-204ENST00000547687 EIF5P55010 431 aaKnown RBP20.57■□□□□ 0.88
CHMP1A-204ENST00000547687 TEX13AQ9BXU3 409 aaPredicted RBP20.57■□□□□ 0.88
CHMP1A-204ENST00000547687 UPF2Q9HAU5 1272 aaKnown RBP20.57■□□□□ 0.88
CHMP1A-204ENST00000547687 TBC1D2BQ9UPU7 963 aa20.57■□□□□ 0.88
CHMP1A-204ENST00000547687 PARP3Q9Y6F1 533 aa20.57■□□□□ 0.88
CHMP1A-204ENST00000547687 BCL2L12Q9HB09 334 aa20.56■□□□□ 0.88
CHMP1A-204ENST00000547687 NARFQ9UHQ1 456 aa20.56■□□□□ 0.88
CHMP1A-204ENST00000547687 PXDNLA1KZ92 1463 aa20.56■□□□□ 0.88
CHMP1A-204ENST00000547687 KIAA1551Q9HCM1 1747 aa20.56■□□□□ 0.88
CHMP1A-204ENST00000547687 LAMB4A4D0S4 1761 aa20.56■□□□□ 0.88
CHMP1A-204ENST00000547687 ADCY9O60503 1353 aa20.55■□□□□ 0.88
CHMP1A-204ENST00000547687 MYL6BP14649 208 aa20.55■□□□□ 0.88
CHMP1A-204ENST00000547687 RPAP2Q8IXW5 612 aaPredicted RBP20.55■□□□□ 0.88
CHMP1A-204ENST00000547687 ANKRD44Q8N8A2 993 aa20.55■□□□□ 0.88
CHMP1A-204ENST00000547687 YY1P25490 414 aa20.54■□□□□ 0.88
CHMP1A-204ENST00000547687 DNAAF4Q8WXU2 420 aa20.54■□□□□ 0.88
CHMP1A-204ENST00000547687 BICDL1Q6ZP65 573 aa20.54■□□□□ 0.88
CHMP1A-204ENST00000547687 SLC4A3P48751 1232 aa20.53■□□□□ 0.88
CHMP1A-204ENST00000547687 AIMP1Q12904 312 aaKnown RBP20.53■□□□□ 0.88
CHMP1A-204ENST00000547687 DCTPP1Q9H773 170 aa20.53■□□□□ 0.88
CHMP1A-204ENST00000547687 SCN7AQ01118 1682 aa20.53■□□□□ 0.88
CHMP1A-204ENST00000547687 NFIXQ14938 502 aa20.53■□□□□ 0.88
CHMP1A-204ENST00000547687 A0A0G2JLW4 131 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 NBPF26B4DH59 902 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 POLRMTO00411 1230 aaKnown RBP20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 TM4SF1P30408 202 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 IL6STP40189 918 aaPredicted RBP20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 CEP85Q6P2H3 762 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 NBPF10Q6P3W6 841 aaKnown RBP20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 KSR2Q6VAB6 950 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 NBPF15Q8N660 670 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 MAP3K2Q9Y2U5 619 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 C10orf71Q711Q0 1435 aa20.52■□□□□ 0.88
CHMP1A-204ENST00000547687 BEND3Q5T5X7 828 aa20.51■□□□□ 0.87
CHMP1A-204ENST00000547687 LRP10Q7Z4F1 713 aa20.51■□□□□ 0.87
CHMP1A-204ENST00000547687 SRCIN1Q9C0H9 1055 aa20.51■□□□□ 0.87
CHMP1A-204ENST00000547687 ATP10DQ9P241 1426 aa20.51■□□□□ 0.87
CHMP1A-204ENST00000547687 BCORQ6W2J9 1755 aa20.51■□□□□ 0.87
CHMP1A-204ENST00000547687 TBC1D32Q96NH3 1257 aa20.51■□□□□ 0.87
CHMP1A-204ENST00000547687 NBR1Q14596 966 aa20.5■□□□□ 0.87
CHMP1A-204ENST00000547687 COPS6Q7L5N1 327 aa20.5■□□□□ 0.87
CHMP1A-204ENST00000547687 XAGE3Q8WTP9 111 aa20.5■□□□□ 0.87
CHMP1A-204ENST00000547687 USP44Q9H0E7 712 aa20.5■□□□□ 0.87
CHMP1A-204ENST00000547687 DDX58O95786 925 aaKnown RBP20.49■□□□□ 0.87
CHMP1A-204ENST00000547687 TBC1D9BQ66K14 1250 aa20.49■□□□□ 0.87
CHMP1A-204ENST00000547687 BRCA1P38398 1863 aaKnown RBP20.49■□□□□ 0.87
CHMP1A-204ENST00000547687 A0A087WZG4 1122 aa20.49■□□□□ 0.87
CHMP1A-204ENST00000547687 GNAI3P08754 354 aa20.49■□□□□ 0.87
CHMP1A-204ENST00000547687 BMP2KLQ5H9B9 411 aa20.49■□□□□ 0.87
CHMP1A-204ENST00000547687 DPEP1P16444 411 aa20.48■□□□□ 0.87
CHMP1A-204ENST00000547687 DZIP3Q86Y13 1208 aaKnown RBP20.48■□□□□ 0.87
CHMP1A-204ENST00000547687 CAMTA2O94983 1202 aa20.48■□□□□ 0.87
CHMP1A-204ENST00000547687 GNAI2P04899 355 aa20.48■□□□□ 0.87
CHMP1A-204ENST00000547687 CCDC24Q8N4L8 307 aa20.48■□□□□ 0.87
CHMP1A-204ENST00000547687 NRXN2Q9P2S2 1712 aa20.47■□□□□ 0.87
CHMP1A-204ENST00000547687 ERBB4Q15303 1308 aa20.47■□□□□ 0.87
CHMP1A-204ENST00000547687 RIC3Q7Z5B4 369 aa20.46■□□□□ 0.87
CHMP1A-204ENST00000547687 SERPINB2P05120 415 aa20.46■□□□□ 0.87
CHMP1A-204ENST00000547687 CHRNA5P30532 468 aa20.46■□□□□ 0.87
CHMP1A-204ENST00000547687 MFAP1P55081 439 aaKnown RBP20.46■□□□□ 0.87
CHMP1A-204ENST00000547687 CARMIL3Q8ND23 1372 aa20.45■□□□□ 0.86
CHMP1A-204ENST00000547687 HMMRO75330 724 aa20.45■□□□□ 0.86
CHMP1A-204ENST00000547687 UBTFL1P0CB47 393 aaPredicted RBP20.45■□□□□ 0.86
CHMP1A-204ENST00000547687 CWF19L2Q2TBE0 894 aaKnown RBP20.44■□□□□ 0.86
CHMP1A-204ENST00000547687 ANKRD13DQ6ZTN6 518 aa20.44■□□□□ 0.86
CHMP1A-204ENST00000547687 ANKRD31Q8N7Z5 1873 aa20.44■□□□□ 0.86
CHMP1A-204ENST00000547687 NBPF7P0C2Y1 421 aaPredicted RBP20.44■□□□□ 0.86
CHMP1A-204ENST00000547687 BECN1Q14457 450 aa20.44■□□□□ 0.86
CHMP1A-204ENST00000547687 LRRFIP2Q9Y608 721 aaKnown RBP20.44■□□□□ 0.86
CHMP1A-204ENST00000547687 NUP98P52948 1817 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 ALDH1L1O75891 902 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 TGFB2P61812 414 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 LINS1Q8NG48 757 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 C22orf23Q9BZE7 217 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 BCS1LQ9Y276 419 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 KCNA3P22001 575 aa20.43■□□□□ 0.86
CHMP1A-204ENST00000547687 PLEKHM2Q8IWE5 1019 aa20.42■□□□□ 0.86
CHMP1A-204ENST00000547687 GRIN3BO60391 1043 aa20.41■□□□□ 0.86
CHMP1A-204ENST00000547687 HLFQ16534 295 aa20.41■□□□□ 0.86
CHMP1A-204ENST00000547687 METTL22Q9BUU2 404 aaPredicted RBP20.41■□□□□ 0.86
CHMP1A-204ENST00000547687 IGKV5-2P06315 115 aa20.41■□□□□ 0.86
CHMP1A-204ENST00000547687 TTLL7Q6ZT98 887 aa20.41■□□□□ 0.86
CHMP1A-204ENST00000547687 ARFGEF2Q9Y6D5 1785 aa20.4■□□□□ 0.86
CHMP1A-204ENST00000547687 NEXNQ0ZGT2 675 aa20.4■□□□□ 0.86
CHMP1A-204ENST00000547687 C16orf71Q8IYS4 520 aaPredicted RBP20.4■□□□□ 0.86
CHMP1A-204ENST00000547687 SETDB2Q96T68 719 aa20.4■□□□□ 0.86
CHMP1A-204ENST00000547687 MYD88Q99836 296 aa20.4■□□□□ 0.86
CHMP1A-204ENST00000547687 FAM177BA6PVY3 158 aa20.39■□□□□ 0.86
CHMP1A-204ENST00000547687 ATP8B2P98198 1209 aa20.39■□□□□ 0.86
CHMP1A-204ENST00000547687 PLBD2Q8NHP8 589 aa20.39■□□□□ 0.86
CHMP1A-204ENST00000547687 C9orf78Q9NZ63 289 aaPredicted RBP20.39■□□□□ 0.86
CHMP1A-204ENST00000547687 CACNA1SQ13698 1873 aa20.39■□□□□ 0.86
CHMP1A-204ENST00000547687 PNMA6EA0A0J9YXQ4 647 aa20.39■□□□□ 0.85
CHMP1A-204ENST00000547687 ARFGEF1Q9Y6D6 1849 aa20.38■□□□□ 0.85
CHMP1A-204ENST00000547687 APBB1O00213 710 aa20.38■□□□□ 0.85
CHMP1A-204ENST00000547687 COL11A2P13942 1736 aaPredicted RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms