RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 GDF9O60383 454 aa11.07□□□□□ -0.64
VPS29-203ENST00000546588 ADH1BP00325 375 aa11.07□□□□□ -0.64
VPS29-203ENST00000546588 HSP90AB2PQ58FF8 381 aa11.07□□□□□ -0.64
VPS29-203ENST00000546588 CCDC97Q96F63 343 aaPredicted RBP11.07□□□□□ -0.64
VPS29-203ENST00000546588 SNRKQ9NRH2 765 aa11.07□□□□□ -0.64
VPS29-203ENST00000546588 KDM3BQ7LBC6 1761 aa11.07□□□□□ -0.64
VPS29-203ENST00000546588 RNF123Q5XPI4 1314 aa11.07□□□□□ -0.64
VPS29-203ENST00000546588 U2AF1L5P0DN76 240 aaPredicted RBP11.06□□□□□ -0.64
VPS29-203ENST00000546588 U2AF1Q01081 240 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS29-203ENST00000546588 CSPP1Q1MSJ5 1256 aa11.06□□□□□ -0.64
VPS29-203ENST00000546588 LIMD1Q9UGP4 676 aa11.06□□□□□ -0.64
VPS29-203ENST00000546588 OVOS2A0A0G2JMS6 1433 aa11.06□□□□□ -0.64
VPS29-203ENST00000546588 CACNA1FO60840 1977 aa11.06□□□□□ -0.64
VPS29-203ENST00000546588 APAF1O14727 1248 aa11.05□□□□□ -0.64
VPS29-203ENST00000546588 RIC3Q7Z5B4 369 aa11.05□□□□□ -0.64
VPS29-203ENST00000546588 WDR63Q8IWG1 891 aa11.05□□□□□ -0.64
VPS29-203ENST00000546588 TCP11L2Q8N4U5 519 aa11.05□□□□□ -0.64
VPS29-203ENST00000546588 COG6Q9Y2V7 657 aa11.05□□□□□ -0.64
VPS29-203ENST00000546588 COL5A2P05997 1499 aaPredicted RBP11.05□□□□□ -0.64
VPS29-203ENST00000546588 IL16Q14005 1332 aa11.05□□□□□ -0.64
VPS29-203ENST00000546588 TMPOP42166 694 aaKnown RBP11.04□□□□□ -0.64
VPS29-203ENST00000546588 PLA2G2CQ5R387 149 aa11.04□□□□□ -0.64
VPS29-203ENST00000546588 NUTM1Q86Y26 1132 aa11.04□□□□□ -0.64
VPS29-203ENST00000546588 WWC1Q8IX03 1113 aa11.04□□□□□ -0.64
VPS29-203ENST00000546588 SPIRE2Q8WWL2 714 aa11.04□□□□□ -0.64
VPS29-203ENST00000546588 DDX11L8A8MPP1 907 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 NR1I2O75469 434 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 AMPHP49418 695 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 XPCQ01831 940 aaPredicted RBP11.03□□□□□ -0.64
VPS29-203ENST00000546588 ZNF697Q5TEC3 545 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 CCDC146Q8IYE0 955 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 FNBP4Q8N3X1 1017 aaPredicted RBP11.03□□□□□ -0.64
VPS29-203ENST00000546588 BANK1Q8NDB2 785 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 UBE2Q2Q8WVN8 375 aa11.03□□□□□ -0.64
VPS29-203ENST00000546588 DDX17Q92841 729 aaKnown RBP11.03□□□□□ -0.64
VPS29-203ENST00000546588 PRKAR2BP31323 418 aa11.02□□□□□ -0.65
VPS29-203ENST00000546588 SLFN5Q08AF3 891 aa11.02□□□□□ -0.65
VPS29-203ENST00000546588 TMEM259Q4ZIN3 620 aa11.02□□□□□ -0.65
VPS29-203ENST00000546588 PKDCCQ504Y2 493 aa11.02□□□□□ -0.65
VPS29-203ENST00000546588 DUSP27Q5VZP5 1158 aa11.02□□□□□ -0.65
VPS29-203ENST00000546588 ZNF330Q9Y3S2 320 aaPredicted RBP11.02□□□□□ -0.65
VPS29-203ENST00000546588 N4BP2Q86UW6 1770 aaPredicted RBP11.02□□□□□ -0.65
VPS29-203ENST00000546588 MAPK8IP3Q9UPT6 1336 aa11.02□□□□□ -0.65
VPS29-203ENST00000546588 MRC1P22897 1456 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 E9PSI1 815 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 U2SURPO15042 1029 aaKnown RBP11.01□□□□□ -0.65
VPS29-203ENST00000546588 PPM1GO15355 546 aaPredicted RBP11.01□□□□□ -0.65
VPS29-203ENST00000546588 TOM1O60784 492 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 NFE2L2Q16236 605 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 SCUBE3Q8IX30 993 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 LRRC59Q96AG4 307 aaKnown RBP11.01□□□□□ -0.65
VPS29-203ENST00000546588 SERPINA10Q9UK55 444 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 PAPPAQ13219 1627 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 KIAA0232Q92628 1395 aa11.01□□□□□ -0.65
VPS29-203ENST00000546588 LRP6O75581 1613 aa11□□□□□ -0.65
VPS29-203ENST00000546588 NUTM2GQ5VZR2 741 aa11□□□□□ -0.65
VPS29-203ENST00000546588 SULF1Q8IWU6 871 aa11□□□□□ -0.65
VPS29-203ENST00000546588 SLC6A16Q9GZN6 736 aa11□□□□□ -0.65
VPS29-203ENST00000546588 UBR2Q8IWV8 1755 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 POTECB2RU33 542 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 CD46P15529 392 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 LMOD3Q0VAK6 560 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 SULT6B1Q6IMI4 303 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 PHACTR3Q96KR7 559 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 CEMIPQ8WUJ3 1361 aa10.99□□□□□ -0.65
VPS29-203ENST00000546588 ZBTB7CA1YPR0 619 aa10.98□□□□□ -0.65
VPS29-203ENST00000546588 HTATSF1O43719 755 aaKnown RBP10.98□□□□□ -0.65
VPS29-203ENST00000546588 AEBP1Q8IUX7 1158 aa10.98□□□□□ -0.65
VPS29-203ENST00000546588 GDPD2Q9HCC8 539 aa10.98□□□□□ -0.65
VPS29-203ENST00000546588 MEGF6O75095 1541 aa10.98□□□□□ -0.65
VPS29-203ENST00000546588 SLIT2O94813 1529 aa10.98□□□□□ -0.65
VPS29-203ENST00000546588 MOXD2PA6NHM9 499 aa10.97□□□□□ -0.65
VPS29-203ENST00000546588 HMOX1P09601 288 aa10.97□□□□□ -0.65
VPS29-203ENST00000546588 CT47B1P0C2W7 299 aaPredicted RBP10.97□□□□□ -0.65
VPS29-203ENST00000546588 ZNF853P0CG23 659 aa10.97□□□□□ -0.65
VPS29-203ENST00000546588 NBPF6Q5VWK0 638 aa10.97□□□□□ -0.65
VPS29-203ENST00000546588 NBPF4Q96M43 638 aa10.97□□□□□ -0.65
VPS29-203ENST00000546588 CRB1P82279 1406 aa10.97□□□□□ -0.65
VPS29-203ENST00000546588 LAMB4A4D0S4 1761 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 TOGARAM1Q9Y4F4 1720 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 CICQ96RK0 1608 aaPredicted RBP10.96□□□□□ -0.65
VPS29-203ENST00000546588 GLI3P10071 1580 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 DISP2A7MBM2 1401 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 WDR17Q8IZU2 1322 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 TNFRSF10AO00220 468 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 SPTLC1O15269 473 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 NEFMP07197 916 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 NDUFV2P19404 249 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 CALD1Q05682 793 aaKnown RBP10.96□□□□□ -0.65
VPS29-203ENST00000546588 PPP2R2DQ66LE6 453 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 RSBN1LQ6PCB5 846 aaPredicted RBP10.96□□□□□ -0.65
VPS29-203ENST00000546588 RDH13Q8NBN7 331 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 GAS2L2Q8NHY3 880 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 ANKRD24Q8TF21 1146 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 PKD2L1Q9P0L9 805 aa10.96□□□□□ -0.65
VPS29-203ENST00000546588 MAP3K5Q99683 1374 aa10.95□□□□□ -0.66
VPS29-203ENST00000546588 NUTM2BA6NNL0 878 aaPredicted RBP10.95□□□□□ -0.66
VPS29-203ENST00000546588 NUTM2EB1AL46 878 aaPredicted RBP10.95□□□□□ -0.66
VPS29-203ENST00000546588 AP1G2O75843 785 aa10.95□□□□□ -0.66
VPS29-203ENST00000546588 ABL2P42684 1182 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms