RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 OLFM4Q6UX06 510 aa29.62■■■□□ 2.33
CHD4-214ENST00000545942 SMC1BQ8NDV3 1235 aa29.62■■■□□ 2.33
CHD4-214ENST00000545942 HSP90AB3PQ58FF7 597 aa29.61■■■□□ 2.33
CHD4-214ENST00000545942 DICER1Q9UPY3 1922 aaKnown RBP29.6■■■□□ 2.33
CHD4-214ENST00000545942 HOXA10P31260 410 aaPredicted RBP29.6■■■□□ 2.33
CHD4-214ENST00000545942 HDGFL1Q5TGJ6 251 aa29.6■■■□□ 2.33
CHD4-214ENST00000545942 UTP14AQ9BVJ6 771 aaKnown RBP29.6■■■□□ 2.33
CHD4-214ENST00000545942 CHPF2Q9P2E5 772 aa29.6■■■□□ 2.33
CHD4-214ENST00000545942 POTECB2RU33 542 aa29.58■■■□□ 2.33
CHD4-214ENST00000545942 RBM17Q96I25 401 aaKnown RBP29.58■■■□□ 2.33
CHD4-214ENST00000545942 ZNF277Q9NRM2 450 aaPredicted RBP29.58■■■□□ 2.33
CHD4-214ENST00000545942 MBIPQ9NS73 344 aa29.58■■■□□ 2.33
CHD4-214ENST00000545942 WDR90Q96KV7 1748 aa29.57■■■□□ 2.32
CHD4-214ENST00000545942 CALD1Q05682 793 aaKnown RBP29.57■■■□□ 2.32
CHD4-214ENST00000545942 RNF123Q5XPI4 1314 aa29.57■■■□□ 2.32
CHD4-214ENST00000545942 ZNF853P0CG23 659 aa29.56■■■□□ 2.32
CHD4-214ENST00000545942 DUSP27Q5VZP5 1158 aa29.56■■■□□ 2.32
CHD4-214ENST00000545942 CC2D2BQ6DHV5 1058 aa29.56■■■□□ 2.32
CHD4-214ENST00000545942 NLRP3Q96P20 1036 aa29.56■■■□□ 2.32
CHD4-214ENST00000545942 CRAMP1Q96RY5 1269 aa29.56■■■□□ 2.32
CHD4-214ENST00000545942 DBF4Q9UBU7 674 aaPredicted RBP29.56■■■□□ 2.32
CHD4-214ENST00000545942 DDNO94850 711 aaPredicted RBP29.55■■■□□ 2.32
CHD4-214ENST00000545942 TCIRG1Q13488 830 aa29.55■■■□□ 2.32
CHD4-214ENST00000545942 SLC10A5Q5PT55 438 aa29.55■■■□□ 2.32
CHD4-214ENST00000545942 C3orf67Q6ZVT6 689 aa29.55■■■□□ 2.32
CHD4-214ENST00000545942 NLRP10Q86W26 655 aa29.55■■■□□ 2.32
CHD4-214ENST00000545942 IFT57Q9NWB7 429 aa29.55■■■□□ 2.32
CHD4-214ENST00000545942 PSMD1Q99460 953 aa29.54■■■□□ 2.32
CHD4-214ENST00000545942 GNAI1P63096 354 aa29.53■■■□□ 2.32
CHD4-214ENST00000545942 SYNE4Q8N205 404 aa29.53■■■□□ 2.32
CHD4-214ENST00000545942 SNED1Q8TER0 1413 aa29.53■■■□□ 2.32
CHD4-214ENST00000545942 IARSP41252 1262 aaKnown RBP29.52■■■□□ 2.32
CHD4-214ENST00000545942 GRIPAP1Q4V328 841 aa29.52■■■□□ 2.32
CHD4-214ENST00000545942 PPEF1O14829 653 aaPredicted RBP29.51■■■□□ 2.32
CHD4-214ENST00000545942 DNAJC5GQ8N7S2 189 aa29.51■■■□□ 2.32
CHD4-214ENST00000545942 PLBD2Q8NHP8 589 aa29.51■■■□□ 2.32
CHD4-214ENST00000545942 HYPKQ9NX55 129 aa29.51■■■□□ 2.32
CHD4-214ENST00000545942 ANKRD13DQ6ZTN6 518 aa29.5■■■□□ 2.31
CHD4-214ENST00000545942 TRMT112Q9UI30 125 aaKnown RBP29.5■■■□□ 2.31
CHD4-214ENST00000545942 CCDC184Q52MB2 194 aa29.49■■■□□ 2.31
CHD4-214ENST00000545942 ANKRD36CQ5JPF3 1778 aa29.49■■■□□ 2.31
CHD4-214ENST00000545942 L3MBTL3Q96JM7 780 aaPredicted RBP29.48■■■□□ 2.31
CHD4-214ENST00000545942 SH3TC1Q8TE82 1336 aa29.48■■■□□ 2.31
CHD4-214ENST00000545942 IQCA1LA6NCM1 817 aa29.47■■■□□ 2.31
CHD4-214ENST00000545942 HTRA3P83110 453 aa29.47■■■□□ 2.31
CHD4-214ENST00000545942 ZNF541Q9H0D2 1346 aa29.47■■■□□ 2.31
CHD4-214ENST00000545942 FZD9O00144 591 aa29.46■■■□□ 2.31
CHD4-214ENST00000545942 TCERG1O14776 1098 aaKnown RBP29.46■■■□□ 2.31
CHD4-214ENST00000545942 HCLS1P14317 486 aaPredicted RBP29.46■■■□□ 2.31
CHD4-214ENST00000545942 JDP2Q8WYK2 163 aa29.46■■■□□ 2.31
CHD4-214ENST00000545942 TMX4Q9H1E5 349 aaPredicted RBP29.46■■■□□ 2.31
CHD4-214ENST00000545942 ZNF316A6NFI3 1004 aaPredicted RBP29.45■■■□□ 2.3
CHD4-214ENST00000545942 ELL2O00472 640 aaPredicted RBP29.45■■■□□ 2.3
CHD4-214ENST00000545942 ABCC4O15439 1325 aa29.45■■■□□ 2.3
CHD4-214ENST00000545942 ATP6V0A2Q9Y487 856 aa29.45■■■□□ 2.3
CHD4-214ENST00000545942 ISCA1Q9BUE6 129 aa29.44■■■□□ 2.3
CHD4-214ENST00000545942 SLC51AQ86UW1 340 aa29.43■■■□□ 2.3
CHD4-214ENST00000545942 BBOX1O75936 387 aa29.42■■■□□ 2.3
CHD4-214ENST00000545942 CHADLQ6NUI6 762 aa29.42■■■□□ 2.3
CHD4-214ENST00000545942 KLRG1Q96E93 195 aa29.42■■■□□ 2.3
CHD4-214ENST00000545942 ATP5J2-PTCD1G3V325 749 aa29.41■■■□□ 2.3
CHD4-214ENST00000545942 DDX46Q7L014 1031 aaKnown RBP29.41■■■□□ 2.3
CHD4-214ENST00000545942 C8orf58Q8NAV2 365 aa29.41■■■□□ 2.3
CHD4-214ENST00000545942 CHMP4AQ9BY43 222 aa29.41■■■□□ 2.3
CHD4-214ENST00000545942 TAF1DQ9H5J8 278 aaPredicted RBP29.41■■■□□ 2.3
CHD4-214ENST00000545942 ANP32CO43423 234 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 POTEIP0CG38 1075 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 POTEJP0CG39 1038 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 GOLGA2Q08379 1002 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 GPC2Q8N158 579 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 LARGE2Q8N3Y3 721 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 ZNF428Q96B54 188 aa29.4■■■□□ 2.3
CHD4-214ENST00000545942 TRIM28Q13263 835 aaKnown RBP29.39■■■□□ 2.3
CHD4-214ENST00000545942 CCDC27Q2M243 656 aa29.39■■■□□ 2.3
CHD4-214ENST00000545942 RIC3Q7Z5B4 369 aa29.39■■■□□ 2.3
CHD4-214ENST00000545942 PHAXQ9H814 394 aaKnown RBP29.39■■■□□ 2.3
CHD4-214ENST00000545942 HACL1Q9UJ83 578 aa29.39■■■□□ 2.3
CHD4-214ENST00000545942 EIF6P56537 245 aaKnown RBP29.38■■■□□ 2.29
CHD4-214ENST00000545942 FAM89AQ96GI7 184 aa29.38■■■□□ 2.29
CHD4-214ENST00000545942 MRS2Q9HD23 443 aa29.38■■■□□ 2.29
CHD4-214ENST00000545942 SCN4AP35499 1836 aa29.37■■■□□ 2.29
CHD4-214ENST00000545942 GRAPQ13588 217 aa29.37■■■□□ 2.29
CHD4-214ENST00000545942 LDHDQ86WU2 507 aa29.37■■■□□ 2.29
CHD4-214ENST00000545942 SP8Q8IXZ3 490 aa29.37■■■□□ 2.29
CHD4-214ENST00000545942 GRAPLQ8TC17 118 aaPredicted RBP29.37■■■□□ 2.29
CHD4-214ENST00000545942 VPS33BQ9H267 617 aa29.37■■■□□ 2.29
CHD4-214ENST00000545942 COL4A5P29400 1685 aa29.36■■■□□ 2.29
CHD4-214ENST00000545942 CCDC30Q5VVM6 783 aa29.36■■■□□ 2.29
CHD4-214ENST00000545942 WWC1Q8IX03 1113 aa29.36■■■□□ 2.29
CHD4-214ENST00000545942 SUPT20HQ8NEM7 779 aa29.36■■■□□ 2.29
CHD4-214ENST00000545942 LAMB2P55268 1798 aa29.36■■■□□ 2.29
CHD4-214ENST00000545942 PPIP5K2O43314 1243 aa29.35■■■□□ 2.29
CHD4-214ENST00000545942 EPHX2P34913 555 aa29.34■■■□□ 2.29
CHD4-214ENST00000545942 DPP8Q6V1X1 898 aaPredicted RBP29.34■■■□□ 2.29
CHD4-214ENST00000545942 TMC4Q7Z404 712 aa29.34■■■□□ 2.29
CHD4-214ENST00000545942 NIM1KQ8IY84 436 aa29.34■■■□□ 2.29
CHD4-214ENST00000545942 RTFDC1Q9BY42 306 aaPredicted RBP29.34■■■□□ 2.29
CHD4-214ENST00000545942 SF3B3Q15393 1217 aaKnown RBP29.33■■■□□ 2.29
CHD4-214ENST00000545942 AOC3Q16853 763 aa29.33■■■□□ 2.29
CHD4-214ENST00000545942 EAPPQ56P03 285 aaPredicted RBP29.33■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms