RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ANO8Q9HCE9 1232 aaPredicted RBP20.11■□□□□ 0.81
PRPF40A-212ENST00000545856 CDHR2Q9BYE9 1310 aa20.11■□□□□ 0.81
PRPF40A-212ENST00000545856 RIC1Q4ADV7 1423 aa20.11■□□□□ 0.81
PRPF40A-212ENST00000545856 GNAI2P04899 355 aa20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 CWF19L2Q2TBE0 894 aaKnown RBP20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 AMIGO3Q86WK7 504 aa20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 EXOC6Q8TAG9 804 aa20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 BCL2L12Q9HB09 334 aa20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 NIP7Q9Y221 180 aaKnown RBP eCLIP20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 NRXN2Q9P2S2 1712 aa20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 CASZ1Q86V15 1759 aa20.1■□□□□ 0.81
PRPF40A-212ENST00000545856 H7C1W4 665 aa20.09■□□□□ 0.81
PRPF40A-212ENST00000545856 GYS1P13807 737 aa20.09■□□□□ 0.81
PRPF40A-212ENST00000545856 ZBTB38Q8NAP3 1195 aaPredicted RBP20.09■□□□□ 0.81
PRPF40A-212ENST00000545856 SETDB2Q96T68 719 aa20.09■□□□□ 0.81
PRPF40A-212ENST00000545856 ATP5J2-PTCD1G3V325 749 aa20.08■□□□□ 0.81
PRPF40A-212ENST00000545856 COL23A1Q86Y22 540 aaPredicted RBP20.08■□□□□ 0.81
PRPF40A-212ENST00000545856 UBN2Q6ZU65 1347 aa20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 ILDR2Q71H61 639 aa20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 RPAP2Q8IXW5 612 aaPredicted RBP20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 MEIS3Q99687 375 aa20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 UTP14AQ9BVJ6 771 aaKnown RBP20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 PLA2G12BQ9BX93 195 aa20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 SRP68Q9UHB9 627 aaKnown RBP20.08■□□□□ 0.8
PRPF40A-212ENST00000545856 SH3TC1Q8TE82 1336 aa20.07■□□□□ 0.8
PRPF40A-212ENST00000545856 IRX6P78412 446 aaPredicted RBP20.07■□□□□ 0.8
PRPF40A-212ENST00000545856 DDX60Q8IY21 1712 aaKnown RBP20.06■□□□□ 0.8
PRPF40A-212ENST00000545856 CASP7P55210 303 aa20.06■□□□□ 0.8
PRPF40A-212ENST00000545856 MTX1Q13505 466 aa20.06■□□□□ 0.8
PRPF40A-212ENST00000545856 PPP4R2Q9NY27 417 aa20.06■□□□□ 0.8
PRPF40A-212ENST00000545856 NTSR2O95665 410 aa20.05■□□□□ 0.8
PRPF40A-212ENST00000545856 GPTP24298 496 aa20.05■□□□□ 0.8
PRPF40A-212ENST00000545856 TBC1D9BQ66K14 1250 aa20.05■□□□□ 0.8
PRPF40A-212ENST00000545856 TPTE2Q6XPS3 522 aa20.05■□□□□ 0.8
PRPF40A-212ENST00000545856 TRMT112Q9UI30 125 aaKnown RBP20.05■□□□□ 0.8
PRPF40A-212ENST00000545856 HMMRO75330 724 aa20.04■□□□□ 0.8
PRPF40A-212ENST00000545856 NBPF7P0C2Y1 421 aaPredicted RBP20.04■□□□□ 0.8
PRPF40A-212ENST00000545856 TM4SF1P30408 202 aa20.04■□□□□ 0.8
PRPF40A-212ENST00000545856 UBE3BQ7Z3V4 1068 aa20.04■□□□□ 0.8
PRPF40A-212ENST00000545856 NFIXQ14938 502 aa20.03■□□□□ 0.8
PRPF40A-212ENST00000545856 RABL6Q3YEC7 729 aaPredicted RBP20.03■□□□□ 0.8
PRPF40A-212ENST00000545856 MSH5O43196 834 aa20.02■□□□□ 0.8
PRPF40A-212ENST00000545856 HDAC1Q13547 482 aaPredicted RBP20.02■□□□□ 0.8
PRPF40A-212ENST00000545856 SLC10A5Q5PT55 438 aa20.02■□□□□ 0.8
PRPF40A-212ENST00000545856 SUSD4Q5VX71 490 aa20.02■□□□□ 0.8
PRPF40A-212ENST00000545856 NBPF5PQ86XG9 351 aaPredicted RBP20.02■□□□□ 0.8
PRPF40A-212ENST00000545856 ANKRD44Q8N8A2 993 aa20.01■□□□□ 0.79
PRPF40A-212ENST00000545856 LRRFIP2Q9Y608 721 aaKnown RBP20.01■□□□□ 0.79
PRPF40A-212ENST00000545856 RTL9Q8NET4 1388 aa20.01■□□□□ 0.79
PRPF40A-212ENST00000545856 RWDD1Q9H446 243 aaPredicted RBP20■□□□□ 0.79
PRPF40A-212ENST00000545856 GTF3C3Q9Y5Q9 886 aa20■□□□□ 0.79
PRPF40A-212ENST00000545856 IRS4O14654 1257 aaPredicted RBP19.99■□□□□ 0.79
PRPF40A-212ENST00000545856 PDE8AO60658 829 aa19.99■□□□□ 0.79
PRPF40A-212ENST00000545856 CEP85Q6P2H3 762 aa19.99■□□□□ 0.79
PRPF40A-212ENST00000545856 CNBD1Q8NA66 436 aa19.99■□□□□ 0.79
PRPF40A-212ENST00000545856 POLRMTO00411 1230 aaKnown RBP19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 GTF2E1P29083 439 aaPredicted RBP19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 ST5P78524 1137 aa19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 ATP8B2P98198 1209 aa19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 SMIM5Q71RC9 77 aa19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 SUCLG2Q96I99 432 aa19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 PDZRN3Q9UPQ7 1066 aa19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 PARP3Q9Y6F1 533 aa19.98■□□□□ 0.79
PRPF40A-212ENST00000545856 FAM89AQ96GI7 184 aa19.97■□□□□ 0.79
PRPF40A-212ENST00000545856 CCDC136Q96JN2 1154 aa19.97■□□□□ 0.79
PRPF40A-212ENST00000545856 MTFR1LQ9H019 292 aa19.97■□□□□ 0.79
PRPF40A-212ENST00000545856 KIF13BQ9NQT8 1826 aa19.97■□□□□ 0.79
PRPF40A-212ENST00000545856 SERPINB2P05120 415 aa19.96■□□□□ 0.79
PRPF40A-212ENST00000545856 CSF1RP07333 972 aa19.96■□□□□ 0.79
PRPF40A-212ENST00000545856 SSH3Q8TE77 659 aa19.96■□□□□ 0.79
PRPF40A-212ENST00000545856 KAZALD1Q96I82 304 aa19.96■□□□□ 0.79
PRPF40A-212ENST00000545856 FBXO3Q9UK99 471 aa19.96■□□□□ 0.79
PRPF40A-212ENST00000545856 PCDHB15Q9Y5E8 787 aa19.96■□□□□ 0.79
PRPF40A-212ENST00000545856 CTSWP56202 376 aa19.95■□□□□ 0.79
PRPF40A-212ENST00000545856 BICDL1Q6ZP65 573 aa19.95■□□□□ 0.79
PRPF40A-212ENST00000545856 BICC1Q9H694 974 aaKnown RBP19.95■□□□□ 0.79
PRPF40A-212ENST00000545856 NPHP1O15259 732 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 MMP10P09238 476 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 FOXO4P98177 505 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 DDR1Q08345 913 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 POLA2Q14181 598 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 SF3B3Q15393 1217 aaKnown RBP19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 CCDC152Q4G0S7 254 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 PRR5LQ6MZQ0 368 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 GCC1Q96CN9 775 aa19.95■□□□□ 0.78
PRPF40A-212ENST00000545856 ANKRD31Q8N7Z5 1873 aa19.94■□□□□ 0.78
PRPF40A-212ENST00000545856 HSP90AB4PQ58FF6 505 aa19.94■□□□□ 0.78
PRPF40A-212ENST00000545856 CENPQQ7L2Z9 268 aaPredicted RBP19.94■□□□□ 0.78
PRPF40A-212ENST00000545856 NLRP3Q96P20 1036 aa19.94■□□□□ 0.78
PRPF40A-212ENST00000545856 C1orf115Q9H7X2 142 aa19.94■□□□□ 0.78
PRPF40A-212ENST00000545856 LRP5O75197 1615 aa19.93■□□□□ 0.78
PRPF40A-212ENST00000545856 SRGAP3O43295 1099 aa19.93■□□□□ 0.78
PRPF40A-212ENST00000545856 ABCC12Q96J65 1359 aa19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 TNRC6CQ9HCJ0 1690 aaKnown RBP19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 KLRG2A4D1S0 409 aaPredicted RBP19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 POLD1P28340 1107 aa19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 R3HDM1Q15032 1099 aaKnown RBP19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 ERFEQ4G0M1 354 aa19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 LMBR1LQ6UX01 489 aa19.92■□□□□ 0.78
PRPF40A-212ENST00000545856 TTLL11Q8NHH1 800 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms