RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MYL6BP14649 208 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 CCDC93Q567U6 631 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 SOGA3Q5TF21 947 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 OLFM4Q6UX06 510 aa11.17□□□□□ -0.62
USP28-215ENST00000545608 MAP3K15Q6ZN16 1313 aa11.16□□□□□ -0.62
USP28-215ENST00000545608 GTF2E1P29083 439 aaPredicted RBP11.16□□□□□ -0.62
USP28-215ENST00000545608 RIPK4P57078 832 aa11.16□□□□□ -0.62
USP28-215ENST00000545608 RALBP1Q15311 655 aa11.16□□□□□ -0.62
USP28-215ENST00000545608 NUTM1Q86Y26 1132 aa11.16□□□□□ -0.62
USP28-215ENST00000545608 TNRC6CQ9HCJ0 1690 aaKnown RBP11.16□□□□□ -0.62
USP28-215ENST00000545608 CEP350Q5VT06 3117 aa11.15□□□□□ -0.62
USP28-215ENST00000545608 GPTP24298 496 aa11.15□□□□□ -0.62
USP28-215ENST00000545608 FKBP4Q02790 459 aaKnown RBP eCLIP11.15□□□□□ -0.62
USP28-215ENST00000545608 DDX10Q13206 875 aaKnown RBP11.15□□□□□ -0.62
USP28-215ENST00000545608 SUSD4Q5VX71 490 aa11.15□□□□□ -0.62
USP28-215ENST00000545608 JMYQ8N9B5 988 aa11.15□□□□□ -0.62
USP28-215ENST00000545608 ZBTB3Q9H5J0 574 aa11.15□□□□□ -0.62
USP28-215ENST00000545608 ZNF277Q9NRM2 450 aaPredicted RBP11.15□□□□□ -0.62
USP28-215ENST00000545608 TSPYL4Q9UJ04 414 aa11.15□□□□□ -0.62
USP28-215ENST00000545608 ABCC12Q96J65 1359 aa11.15□□□□□ -0.63
USP28-215ENST00000545608 FER1L6Q2WGJ9 1857 aa11.15□□□□□ -0.63
USP28-215ENST00000545608 CCDC88AQ3V6T2 1871 aa11.15□□□□□ -0.63
USP28-215ENST00000545608 UBN2Q6ZU65 1347 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 POTEIP0CG38 1075 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 POTEJP0CG39 1038 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 CHRM1P11229 460 aaPredicted RBP11.14□□□□□ -0.63
USP28-215ENST00000545608 EIF2S2P20042 333 aaKnown RBP11.14□□□□□ -0.63
USP28-215ENST00000545608 ALDH1B1P30837 517 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 TMPOP42166 694 aaKnown RBP11.14□□□□□ -0.63
USP28-215ENST00000545608 PDIA6Q15084 440 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 KIF6Q6ZMV9 814 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 LRP10Q7Z4F1 713 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 ZNF34Q8IZ26 560 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 NYXQ9GZU5 481 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 WDR90Q96KV7 1748 aa11.14□□□□□ -0.63
USP28-215ENST00000545608 TIAM2Q8IVF5 1701 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 ANXA1P04083 346 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 MNX1P50219 401 aaPredicted RBP11.13□□□□□ -0.63
USP28-215ENST00000545608 CRY2Q49AN0 593 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 GIGYF2Q6Y7W6 1299 aaKnown RBP11.13□□□□□ -0.63
USP28-215ENST00000545608 RTKN2Q8IZC4 609 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 SYNE4Q8N205 404 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 DLG5Q8TDM6 1919 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 KDM3BQ7LBC6 1761 aa11.13□□□□□ -0.63
USP28-215ENST00000545608 ERBB4Q15303 1308 aa11.12□□□□□ -0.63
USP28-215ENST00000545608 PROSER3Q2NL68 480 aa11.12□□□□□ -0.63
USP28-215ENST00000545608 CHADLQ6NUI6 762 aa11.12□□□□□ -0.63
USP28-215ENST00000545608 CCDC146Q8IYE0 955 aa11.12□□□□□ -0.63
USP28-215ENST00000545608 ZNF541Q9H0D2 1346 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 STK25O00506 426 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 NTSR2O95665 410 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 HOXA10P31260 410 aaPredicted RBP11.11□□□□□ -0.63
USP28-215ENST00000545608 IARSP41252 1262 aaKnown RBP11.11□□□□□ -0.63
USP28-215ENST00000545608 NEUROD2Q15784 382 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 C3orf67Q6ZVT6 689 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 SLC51AQ86UW1 340 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 NECTIN2Q92692 538 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 L3MBTL3Q96JM7 780 aaPredicted RBP11.11□□□□□ -0.63
USP28-215ENST00000545608 TAF1DQ9H5J8 278 aaPredicted RBP11.11□□□□□ -0.63
USP28-215ENST00000545608 BABAM1Q9NWV8 329 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 LAMB4A4D0S4 1761 aa11.11□□□□□ -0.63
USP28-215ENST00000545608 MYBBP1AQ9BQG0 1328 aaKnown RBP11.1□□□□□ -0.63
USP28-215ENST00000545608 DICER1Q9UPY3 1922 aaKnown RBP11.1□□□□□ -0.63
USP28-215ENST00000545608 FZD9O00144 591 aa11.1□□□□□ -0.63
USP28-215ENST00000545608 LMOD3Q0VAK6 560 aa11.1□□□□□ -0.63
USP28-215ENST00000545608 KRT24Q2M2I5 525 aa11.1□□□□□ -0.63
USP28-215ENST00000545608 RPGRQ92834 1020 aaKnown RBP11.1□□□□□ -0.63
USP28-215ENST00000545608 IBTKQ9P2D0 1353 aaPredicted RBP11.1□□□□□ -0.63
USP28-215ENST00000545608 ARFGEF2Q9Y6D5 1785 aa11.1□□□□□ -0.63
USP28-215ENST00000545608 SNED1Q8TER0 1413 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 CACNA1SQ13698 1873 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 IQCA1LA6NCM1 817 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 CHL1O00533 1208 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 TCERG1O14776 1098 aaKnown RBP11.09□□□□□ -0.63
USP28-215ENST00000545608 PARP10Q53GL7 1025 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 SLC10A5Q5PT55 438 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 CC2D2BQ6DHV5 1058 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 COPS6Q7L5N1 327 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 PPP1R42Q7Z4L9 355 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 RASEFQ8IZ41 740 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 RBM17Q96I25 401 aaKnown RBP11.09□□□□□ -0.63
USP28-215ENST00000545608 CRAMP1Q96RY5 1269 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 PSMD1Q99460 953 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 TRIM35Q9UPQ4 493 aa11.09□□□□□ -0.63
USP28-215ENST00000545608 PRKCSHP14314 528 aaPredicted RBP11.08□□□□□ -0.64
USP28-215ENST00000545608 AIMP1Q12904 312 aaKnown RBP11.08□□□□□ -0.64
USP28-215ENST00000545608 COL13A1Q5TAT6 717 aaPredicted RBP11.08□□□□□ -0.64
USP28-215ENST00000545608 LDHDQ86WU2 507 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 XAGE3Q8WTP9 111 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 RUNDC1Q96C34 613 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 NLRP3Q96P20 1036 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 UTP14AQ9BVJ6 771 aaKnown RBP11.08□□□□□ -0.64
USP28-215ENST00000545608 HACL1Q9UJ83 578 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 ADAMTS8Q9UP79 889 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 LAS1LQ9Y4W2 734 aaKnown RBP11.08□□□□□ -0.64
USP28-215ENST00000545608 RIC1Q4ADV7 1423 aa11.08□□□□□ -0.64
USP28-215ENST00000545608 NUP98P52948 1817 aa11.07□□□□□ -0.64
USP28-215ENST00000545608 PPEF1O14829 653 aaPredicted RBP11.07□□□□□ -0.64
USP28-215ENST00000545608 EPHX2P34913 555 aa11.07□□□□□ -0.64
USP28-215ENST00000545608 EAPPQ56P03 285 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms