RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 RNF123Q5XPI4 1314 aa14.75□□□□□ -0.05
YBX3-216ENST00000544622 VAMP4O75379 141 aa14.75□□□□□ -0.05
YBX3-216ENST00000544622 HOXA10P31260 410 aaPredicted RBP14.75□□□□□ -0.05
YBX3-216ENST00000544622 PRPF40BQ6NWY9 871 aaKnown RBP14.75□□□□□ -0.05
YBX3-216ENST00000544622 NFKBIEO00221 500 aa14.74□□□□□ -0.05
YBX3-216ENST00000544622 C21orf2O43822 256 aa14.74□□□□□ -0.05
YBX3-216ENST00000544622 TNRC6CQ9HCJ0 1690 aaKnown RBP14.74□□□□□ -0.05
YBX3-216ENST00000544622 SLX4Q8IY92 1834 aa14.73□□□□□ -0.05
YBX3-216ENST00000544622 ALDH1B1P30837 517 aa14.73□□□□□ -0.05
YBX3-216ENST00000544622 GOLGA2Q08379 1002 aa14.73□□□□□ -0.05
YBX3-216ENST00000544622 C9orf131Q5VYM1 1079 aa14.73□□□□□ -0.05
YBX3-216ENST00000544622 C3orf67Q6ZVT6 689 aa14.73□□□□□ -0.05
YBX3-216ENST00000544622 ANKRD36CQ5JPF3 1778 aa14.73□□□□□ -0.05
YBX3-216ENST00000544622 EXOSC9Q06265 439 aaKnown RBP14.72□□□□□ -0.05
YBX3-216ENST00000544622 SYNE4Q8N205 404 aa14.72□□□□□ -0.05
YBX3-216ENST00000544622 ARFGEF2Q9Y6D5 1785 aa14.72□□□□□ -0.05
YBX3-216ENST00000544622 SBF1O95248 1867 aa14.72□□□□□ -0.05
YBX3-216ENST00000544622 LTBP3Q9NS15 1303 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 ATP5J2-PTCD1G3V325 749 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 SLC4A2P04920 1241 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 RASSF7Q02833 373 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 G2E3Q7L622 706 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 RIC3Q7Z5B4 369 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 NLRP3Q96P20 1036 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 TRMT112Q9UI30 125 aaKnown RBP14.71□□□□□ -0.05
YBX3-216ENST00000544622 SNED1Q8TER0 1413 aa14.71□□□□□ -0.05
YBX3-216ENST00000544622 SH3TC1Q8TE82 1336 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 LMNB1P20700 586 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 SOGA3Q5TF21 947 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 DIEXFQ68CQ4 756 aaKnown RBP14.7□□□□□ -0.06
YBX3-216ENST00000544622 KSR2Q6VAB6 950 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 CRAMP1Q96RY5 1269 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 METTL22Q9BUU2 404 aaPredicted RBP14.7□□□□□ -0.06
YBX3-216ENST00000544622 STK31Q9BXU1 1019 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 MYH16Q9H6N6 1097 aa14.7□□□□□ -0.06
YBX3-216ENST00000544622 FER1L6Q2WGJ9 1857 aa14.69□□□□□ -0.06
YBX3-216ENST00000544622 ZC3H4Q9UPT8 1303 aaKnown RBP14.69□□□□□ -0.06
YBX3-216ENST00000544622 PI4KAP2A4QPH2 592 aa14.69□□□□□ -0.06
YBX3-216ENST00000544622 TCERG1O14776 1098 aaKnown RBP14.69□□□□□ -0.06
YBX3-216ENST00000544622 HCLS1P14317 486 aaPredicted RBP14.69□□□□□ -0.06
YBX3-216ENST00000544622 PI4KAP1Q8N8J0 262 aa14.69□□□□□ -0.06
YBX3-216ENST00000544622 RNF181Q9P0P0 153 aa14.69□□□□□ -0.06
YBX3-216ENST00000544622 ZNF219Q9P2Y4 722 aaPredicted RBP14.69□□□□□ -0.06
YBX3-216ENST00000544622 DDX58O95786 925 aaKnown RBP14.68□□□□□ -0.06
YBX3-216ENST00000544622 OLFM4Q6UX06 510 aa14.68□□□□□ -0.06
YBX3-216ENST00000544622 TRMT2AQ8IZ69 625 aaKnown RBP14.68□□□□□ -0.06
YBX3-216ENST00000544622 MIER1Q8N108 512 aa14.68□□□□□ -0.06
YBX3-216ENST00000544622 ZBTB38Q8NAP3 1195 aaPredicted RBP14.68□□□□□ -0.06
YBX3-216ENST00000544622 CCDC191Q8NCU4 936 aa14.68□□□□□ -0.06
YBX3-216ENST00000544622 FAM89AQ96GI7 184 aa14.68□□□□□ -0.06
YBX3-216ENST00000544622 RBM17Q96I25 401 aaKnown RBP14.68□□□□□ -0.06
YBX3-216ENST00000544622 MYD88Q99836 296 aa14.68□□□□□ -0.06
YBX3-216ENST00000544622 GPBP1L1Q9HC44 474 aaPredicted RBP14.68□□□□□ -0.06
YBX3-216ENST00000544622 IGKV5-2P06315 115 aa14.67□□□□□ -0.06
YBX3-216ENST00000544622 SLFN5Q08AF3 891 aa14.67□□□□□ -0.06
YBX3-216ENST00000544622 FLIIQ13045 1269 aa14.67□□□□□ -0.06
YBX3-216ENST00000544622 SF3B3Q15393 1217 aaKnown RBP14.67□□□□□ -0.06
YBX3-216ENST00000544622 CCDC93Q567U6 631 aa14.67□□□□□ -0.06
YBX3-216ENST00000544622 RPGRQ92834 1020 aaKnown RBP14.67□□□□□ -0.06
YBX3-216ENST00000544622 TAOK3Q9H2K8 898 aa14.67□□□□□ -0.06
YBX3-216ENST00000544622 MAP3K2Q9Y2U5 619 aa14.67□□□□□ -0.06
YBX3-216ENST00000544622 E9PSI1 815 aa14.66□□□□□ -0.06
YBX3-216ENST00000544622 CC2D2BQ6DHV5 1058 aa14.66□□□□□ -0.06
YBX3-216ENST00000544622 RTKN2Q8IZC4 609 aa14.66□□□□□ -0.06
YBX3-216ENST00000544622 ZNF428Q96B54 188 aa14.66□□□□□ -0.06
YBX3-216ENST00000544622 KIF3CO14782 793 aa14.65□□□□□ -0.06
YBX3-216ENST00000544622 PCCAP05165 728 aaPredicted RBP14.65□□□□□ -0.06
YBX3-216ENST00000544622 FKBP4Q02790 459 aaKnown RBP eCLIP14.65□□□□□ -0.06
YBX3-216ENST00000544622 ZNF526Q8TF50 670 aaPredicted RBP14.65□□□□□ -0.06
YBX3-216ENST00000544622 PSMD1Q99460 953 aa14.65□□□□□ -0.06
YBX3-216ENST00000544622 ABCC4O15439 1325 aa14.65□□□□□ -0.06
YBX3-216ENST00000544622 DDX60Q8IY21 1712 aaKnown RBP14.64□□□□□ -0.07
YBX3-216ENST00000544622 CACNA1SQ13698 1873 aa14.64□□□□□ -0.07
YBX3-216ENST00000544622 IRS4O14654 1257 aaPredicted RBP14.64□□□□□ -0.07
YBX3-216ENST00000544622 BBOX1O75936 387 aa14.64□□□□□ -0.07
YBX3-216ENST00000544622 GRIPAP1Q4V328 841 aa14.64□□□□□ -0.07
YBX3-216ENST00000544622 SLC51AQ86UW1 340 aa14.64□□□□□ -0.07
YBX3-216ENST00000544622 CDCA7LQ96GN5 454 aa14.64□□□□□ -0.07
YBX3-216ENST00000544622 CWC25Q9NXE8 425 aaPredicted RBP14.64□□□□□ -0.07
YBX3-216ENST00000544622 ATP6V0A2Q9Y487 856 aa14.64□□□□□ -0.07
YBX3-216ENST00000544622 LAMB2P55268 1798 aa14.63□□□□□ -0.07
YBX3-216ENST00000544622 GLTPD2A6NH11 291 aa14.63□□□□□ -0.07
YBX3-216ENST00000544622 PPEF1O14829 653 aaPredicted RBP14.63□□□□□ -0.07
YBX3-216ENST00000544622 C1QTNF8P60827 252 aa14.63□□□□□ -0.07
YBX3-216ENST00000544622 CACNA1FO60840 1977 aa14.63□□□□□ -0.07
YBX3-216ENST00000544622 NEURL1BA8MQ27 555 aa14.62□□□□□ -0.07
YBX3-216ENST00000544622 FKBP5Q13451 457 aaPredicted RBP14.62□□□□□ -0.07
YBX3-216ENST00000544622 GRAPQ13588 217 aa14.62□□□□□ -0.07
YBX3-216ENST00000544622 CWF19L2Q2TBE0 894 aaKnown RBP14.62□□□□□ -0.07
YBX3-216ENST00000544622 RTL5Q5HYW3 569 aaPredicted RBP14.62□□□□□ -0.07
YBX3-216ENST00000544622 SP8Q8IXZ3 490 aa14.62□□□□□ -0.07
YBX3-216ENST00000544622 GRAPLQ8TC17 118 aaPredicted RBP14.62□□□□□ -0.07
YBX3-216ENST00000544622 DNAAF4Q8WXU2 420 aa14.62□□□□□ -0.07
YBX3-216ENST00000544622 CDHR2Q9BYE9 1310 aa14.62□□□□□ -0.07
YBX3-216ENST00000544622 CCDC88AQ3V6T2 1871 aa14.61□□□□□ -0.07
YBX3-216ENST00000544622 DICER1Q9UPY3 1922 aaKnown RBP14.61□□□□□ -0.07
YBX3-216ENST00000544622 H7C1W4 665 aa14.61□□□□□ -0.07
YBX3-216ENST00000544622 NEXNQ0ZGT2 675 aa14.61□□□□□ -0.07
YBX3-216ENST00000544622 DDX46Q7L014 1031 aaKnown RBP14.61□□□□□ -0.07
YBX3-216ENST00000544622 LINS1Q8NG48 757 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms