RNA–Protein interactions for RNA: ENST00000544610.1

CDCA3-209, Transcript of cell division cycle associated 3, humanhuman

TSL 3

Gene CDCA3, Length 624 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-209ENST00000544610 RIOK3O14730 519 aaKnown RBP8.61□□□□□ -1.03
CDCA3-209ENST00000544610 C21orf2O43822 256 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 CAMTA2O94983 1202 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 CENPBP07199 599 aaPredicted RBP8.61□□□□□ -1.03
CDCA3-209ENST00000544610 CCDC27Q2M243 656 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 DPY19L2Q6NUT2 758 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 FAM9BQ8IZU0 186 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 CNBD1Q8NA66 436 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 ZNF622Q969S3 477 aaKnown RBP eCLIP8.61□□□□□ -1.034e-7■□□□□ 9.1
CDCA3-209ENST00000544610 ADAMTS8Q9UP79 889 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 ZNF330Q9Y3S2 320 aaPredicted RBP8.61□□□□□ -1.03
CDCA3-209ENST00000544610 ARFGEF2Q9Y6D5 1785 aa8.61□□□□□ -1.03
CDCA3-209ENST00000544610 BTBD11A6QL63 1104 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 GTPBP6O43824 516 aaPredicted RBP8.6□□□□□ -1.03
CDCA3-209ENST00000544610 A1BGP04217 495 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 SRGNP10124 158 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 ERFEQ4G0M1 354 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 STYK1Q6J9G0 422 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 CCDC24Q8N4L8 307 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 RUNDC1Q96C34 613 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 SETDB2Q96T68 719 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 RSPH6AQ9H0K4 717 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 TAOK3Q9H2K8 898 aa8.6□□□□□ -1.03
CDCA3-209ENST00000544610 DICER1Q9UPY3 1922 aaKnown RBP8.59□□□□□ -1.03
CDCA3-209ENST00000544610 KCNQ3O43525 872 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 NEFMP07197 916 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 PRKAR2BP31323 418 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 ST5P78524 1137 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 SOGA3Q5TF21 947 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 PRPF40BQ6NWY9 871 aaKnown RBP8.59□□□□□ -1.03
CDCA3-209ENST00000544610 NPM2Q86SE8 214 aaKnown RBP8.59□□□□□ -1.03
CDCA3-209ENST00000544610 DZIP3Q86Y13 1208 aaKnown RBP8.59□□□□□ -1.03
CDCA3-209ENST00000544610 CNKSR1Q969H4 720 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 PHACTR3Q96KR7 559 aa8.59□□□□□ -1.03
CDCA3-209ENST00000544610 CCDC88AQ3V6T2 1871 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 STK25O00506 426 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 ST18O60284 1047 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 HSPA1AP0DMV8 641 aaKnown RBP8.58□□□□□ -1.04
CDCA3-209ENST00000544610 HSPA1BP0DMV9 641 aaKnown RBP8.58□□□□□ -1.04
CDCA3-209ENST00000544610 U2AF1L5P0DN76 240 aaPredicted RBP8.58□□□□□ -1.04
CDCA3-209ENST00000544610 U2AF1Q01081 240 aaKnown RBP eCLIP8.58□□□□□ -1.04
CDCA3-209ENST00000544610 DCAF8Q5TAQ9 597 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 CLEC4GQ6UXB4 293 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 MASTLQ96GX5 879 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 PLEKHF1Q96S99 279 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 USP16Q9Y5T5 823 aa8.58□□□□□ -1.04
CDCA3-209ENST00000544610 SLX4Q8IY92 1834 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 PRAMEF22A3QJZ6 481 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 KLRG2A4D1S0 409 aaPredicted RBP8.57□□□□□ -1.04
CDCA3-209ENST00000544610 NPHP1O15259 732 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 DDNO94850 711 aaPredicted RBP8.57□□□□□ -1.04
CDCA3-209ENST00000544610 PIP4K2AP48426 406 aaPredicted RBP8.57□□□□□ -1.04
CDCA3-209ENST00000544610 HNRNPUQ00839 825 aaKnown RBP eCLIP8.57□□□□□ -1.04
CDCA3-209ENST00000544610 CNGB1Q14028 1251 aaPredicted RBP8.57□□□□□ -1.04
CDCA3-209ENST00000544610 TNS4Q8IZW8 715 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 C7orf43Q8WVR3 580 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 CREBZFQ9NS37 354 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 ZNF652Q9Y2D9 606 aa8.57□□□□□ -1.04
CDCA3-209ENST00000544610 ZNF521Q96K83 1311 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 CACNA1SQ13698 1873 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 HTATSF1O43719 755 aaKnown RBP8.56□□□□□ -1.04
CDCA3-209ENST00000544610 SNRPA1P09661 255 aaKnown RBP8.56□□□□□ -1.04
CDCA3-209ENST00000544610 NPR1P16066 1061 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 CALD1Q05682 793 aaKnown RBP8.56□□□□□ -1.04
CDCA3-209ENST00000544610 LMOD3Q0VAK6 560 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 TMEM132AQ24JP5 1023 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 CCDC93Q567U6 631 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 MCM10Q7L590 875 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 NBPF5PQ86XG9 351 aaPredicted RBP8.56□□□□□ -1.04
CDCA3-209ENST00000544610 L3MBTL3Q96JM7 780 aaPredicted RBP8.56□□□□□ -1.04
CDCA3-209ENST00000544610 LAMB4A4D0S4 1761 aa8.56□□□□□ -1.04
CDCA3-209ENST00000544610 IL16Q14005 1332 aa8.55□□□□□ -1.04
CDCA3-209ENST00000544610 MAPK8IP3Q9UPT6 1336 aa8.55□□□□□ -1.04
CDCA3-209ENST00000544610 IQCA1LA6NCM1 817 aa8.55□□□□□ -1.04
CDCA3-209ENST00000544610 NBPF26B4DH59 902 aa8.55□□□□□ -1.04
CDCA3-209ENST00000544610 FKBP4Q02790 459 aaKnown RBP eCLIP8.55□□□□□ -1.04
CDCA3-209ENST00000544610 NBPF10Q6P3W6 841 aaKnown RBP8.55□□□□□ -1.04
CDCA3-209ENST00000544610 WDR63Q8IWG1 891 aa8.55□□□□□ -1.04
CDCA3-209ENST00000544610 NBPF15Q8N660 670 aa8.55□□□□□ -1.04
CDCA3-209ENST00000544610 RTF1Q92541 710 aaKnown RBP8.55□□□□□ -1.04
CDCA3-209ENST00000544610 PASKQ96RG2 1323 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 SNED1Q8TER0 1413 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 SCN4AP35499 1836 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 ADAMTSL1Q8N6G6 1762 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 CNTNAP1P78357 1384 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 NUBP1P53384 320 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 TPTE2Q6XPS3 522 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 LDHDQ86WU2 507 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 TAF1DQ9H5J8 278 aaPredicted RBP8.54□□□□□ -1.04
CDCA3-209ENST00000544610 MKRN1Q9UHC7 482 aaKnown RBP8.54□□□□□ -1.04
CDCA3-209ENST00000544610 NIP7Q9Y221 180 aaKnown RBP eCLIP8.54□□□□□ -1.04
CDCA3-209ENST00000544610 ZNF541Q9H0D2 1346 aa8.54□□□□□ -1.04
CDCA3-209ENST00000544610 APAF1O14727 1248 aa8.53□□□□□ -1.04
CDCA3-209ENST00000544610 DCTN1Q14203 1278 aa8.53□□□□□ -1.04
CDCA3-209ENST00000544610 NFE2L2Q16236 605 aa8.53□□□□□ -1.04
CDCA3-209ENST00000544610 RTKN2Q8IZC4 609 aa8.53□□□□□ -1.04
CDCA3-209ENST00000544610 MS4A3Q96HJ5 214 aa8.53□□□□□ -1.04
CDCA3-209ENST00000544610 ZNF277Q9NRM2 450 aaPredicted RBP8.53□□□□□ -1.04
CDCA3-209ENST00000544610 RIC1Q4ADV7 1423 aa8.53□□□□□ -1.04
CDCA3-209ENST00000544610 KDM3BQ7LBC6 1761 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 220.8 ms