RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 HIP1O00291 1037 aa16.57■□□□□ 0.24
LIMS1-215ENST00000544547 PUS7Q96PZ0 661 aaKnown RBP16.56■□□□□ 0.24
LIMS1-215ENST00000544547 LMOD1P29536 600 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-215ENST00000544547 NFXL1Q6ZNB6 911 aa16.56■□□□□ 0.24
LIMS1-215ENST00000544547 PPP1R42Q7Z4L9 355 aa16.56■□□□□ 0.24
LIMS1-215ENST00000544547 RALYLQ86SE5 291 aaKnown RBP16.56■□□□□ 0.24
LIMS1-215ENST00000544547 PTPRCP08575 1304 aa16.56■□□□□ 0.24
LIMS1-215ENST00000544547 CBFA2T2O43439 604 aa16.56■□□□□ 0.24
LIMS1-215ENST00000544547 TAF7Q15545 349 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-215ENST00000544547 PPFIBP1Q86W92 1011 aa16.56■□□□□ 0.24
LIMS1-215ENST00000544547 SYNMO15061 1565 aa16.56■□□□□ 0.24
LIMS1-215ENST00000544547 GNAT3A8MTJ3 354 aa16.55■□□□□ 0.24
LIMS1-215ENST00000544547 DHX16O60231 1041 aaKnown RBP16.55■□□□□ 0.24
LIMS1-215ENST00000544547 LIG1P18858 919 aa16.55■□□□□ 0.24
LIMS1-215ENST00000544547 ZDHHC9Q9Y397 364 aa16.55■□□□□ 0.24
LIMS1-215ENST00000544547 NPHP3Q7Z494 1330 aa16.55■□□□□ 0.24
LIMS1-215ENST00000544547 CTAGE5O15320 804 aa16.55■□□□□ 0.24
LIMS1-215ENST00000544547 AMOTL1Q8IY63 956 aa16.55■□□□□ 0.24
LIMS1-215ENST00000544547 KDM5AP29375 1690 aaKnown RBP16.55■□□□□ 0.24
LIMS1-215ENST00000544547 CCDC12Q8WUD4 166 aaPredicted RBP16.55■□□□□ 0.24
LIMS1-215ENST00000544547 MNAT1P51948 309 aa16.54■□□□□ 0.24
LIMS1-215ENST00000544547 VPS18Q9P253 973 aa16.54■□□□□ 0.24
LIMS1-215ENST00000544547 PPIP5K1Q6PFW1 1433 aa16.54■□□□□ 0.24
LIMS1-215ENST00000544547 IL13P35225 146 aa16.54■□□□□ 0.24
LIMS1-215ENST00000544547 NCBP1Q09161 790 aaKnown RBP16.54■□□□□ 0.24
LIMS1-215ENST00000544547 ANKRD20A12PQ8NF67 263 aa16.54■□□□□ 0.24
LIMS1-215ENST00000544547 POLR3DP05423 398 aaPredicted RBP16.54■□□□□ 0.24
LIMS1-215ENST00000544547 ACEP12821 1306 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 SLC3A2P08195 630 aaKnown RBP16.53■□□□□ 0.24
LIMS1-215ENST00000544547 SIRT2Q8IXJ6 389 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 RBM33Q96EV2 1170 aaKnown RBP16.53■□□□□ 0.24
LIMS1-215ENST00000544547 IFNKQ9P0W0 207 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 ZNF518AQ6AHZ1 1483 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 ATP7AQ04656 1500 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 KIAA0754O94854 1291 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 RHPN1Q8TCX5 695 aa16.53■□□□□ 0.24
LIMS1-215ENST00000544547 CAVIN2O95810 425 aa16.52■□□□□ 0.24
LIMS1-215ENST00000544547 NAP1L1P55209 391 aaKnown RBP16.52■□□□□ 0.24
LIMS1-215ENST00000544547 DHX8Q14562 1220 aaKnown RBP16.52■□□□□ 0.24
LIMS1-215ENST00000544547 BRF1Q92994 677 aa16.52■□□□□ 0.24
LIMS1-215ENST00000544547 CARD6Q9BX69 1037 aa16.52■□□□□ 0.24
LIMS1-215ENST00000544547 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.52■□□□□ 0.24
LIMS1-215ENST00000544547 EVCP57679 992 aa16.52■□□□□ 0.24
LIMS1-215ENST00000544547 ZNF530Q6P9A1 599 aaPredicted RBP16.52■□□□□ 0.24
LIMS1-215ENST00000544547 ZNF710Q8N1W2 664 aa16.52■□□□□ 0.23
LIMS1-215ENST00000544547 RBM8AQ9Y5S9 174 aaKnown RBP16.52■□□□□ 0.23
LIMS1-215ENST00000544547 SBNO2Q9Y2G9 1366 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 CCDC150Q8NCX0 1101 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 MSH6P52701 1360 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 NPATQ14207 1427 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 TERF2Q15554 542 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 MTHFSDQ2M296 383 aaKnown RBP16.51■□□□□ 0.23
LIMS1-215ENST00000544547 KLHL10Q6JEL2 608 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 ERC1Q8IUD2 1116 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 DRC1Q96MC2 740 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 CRACR2AQ9BSW2 395 aa16.51■□□□□ 0.23
LIMS1-215ENST00000544547 CACTINQ8WUQ7 758 aaKnown RBP16.5■□□□□ 0.23
LIMS1-215ENST00000544547 UTP14AQ9BVJ6 771 aaKnown RBP16.5■□□□□ 0.23
LIMS1-215ENST00000544547 SRRTQ9BXP5 876 aaKnown RBP16.5■□□□□ 0.23
LIMS1-215ENST00000544547 SNX14Q9Y5W7 946 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 ERICH2A1L162 156 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 MYL6BP14649 208 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 UBASH3AP57075 661 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 FILIP1LQ4L180 1135 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 LARP1Q6PKG0 1096 aaKnown RBP16.5■□□□□ 0.23
LIMS1-215ENST00000544547 RAB11FIP4Q86YS3 637 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 ESCO1Q5FWF5 840 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 MICALL1Q8N3F8 863 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 DNAAF4Q8WXU2 420 aa16.5■□□□□ 0.23
LIMS1-215ENST00000544547 POLR1AO95602 1720 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-215ENST00000544547 TTC31Q49AM3 519 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 PHF23Q9BUL5 403 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 RAI14Q9P0K7 980 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 ADCY10Q96PN6 1610 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 EPB41L2O43491 1005 aaKnown RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 USP8P40818 1118 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 SAFBQ15424 915 aaKnown RBP eCLIP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 ZSCAN26Q16670 478 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 CDC37L1Q7L3B6 337 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 SMARCC1Q92922 1105 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 PUF60Q9UHX1 559 aaKnown RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 YTHDC2Q9H6S0 1430 aaKnown RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 KIF5CO60282 957 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 SMARCE1Q969G3 411 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 ECHDC1Q9NTX5 307 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 PI4KAP2A4QPH2 592 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 OAS2P29728 719 aaKnown RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 KRT32Q14532 448 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 KARSQ15046 597 aaKnown RBP16.49■□□□□ 0.23
LIMS1-215ENST00000544547 PI4KAP1Q8N8J0 262 aa16.49■□□□□ 0.23
LIMS1-215ENST00000544547 PREX2Q70Z35 1606 aa16.48■□□□□ 0.23
LIMS1-215ENST00000544547 TTC21BQ7Z4L5 1316 aa16.48■□□□□ 0.23
LIMS1-215ENST00000544547 A0A087WWV3 80 aa16.48■□□□□ 0.23
LIMS1-215ENST00000544547 HNRNPH2P55795 449 aaKnown RBP16.48■□□□□ 0.23
LIMS1-215ENST00000544547 JMYQ8N9B5 988 aa16.48■□□□□ 0.23
LIMS1-215ENST00000544547 TRPM2O94759 1503 aa16.48■□□□□ 0.23
LIMS1-215ENST00000544547 BTBD11A6QL63 1104 aa16.48■□□□□ 0.23
LIMS1-215ENST00000544547 ATP8B2P98198 1209 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 TTC6Q86TZ1 520 aa16.47■□□□□ 0.23
LIMS1-215ENST00000544547 GIMAP7Q8NHV1 300 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms