RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 TRIM28Q13263 835 aaKnown RBP17.57■□□□□ 0.4
VPS33A-209ENST00000544349 TRPC5Q9UL62 973 aaPredicted RBP17.57■□□□□ 0.4
VPS33A-209ENST00000544349 OS9Q13438 667 aaPredicted RBP17.56■□□□□ 0.4
VPS33A-209ENST00000544349 ITPK1Q13572 414 aa17.56■□□□□ 0.4
VPS33A-209ENST00000544349 GIGYF2Q6Y7W6 1299 aaKnown RBP17.56■□□□□ 0.4
VPS33A-209ENST00000544349 ARXQ96QS3 562 aa17.56■□□□□ 0.4
VPS33A-209ENST00000544349 STAP2Q9UGK3 403 aa17.56■□□□□ 0.4
VPS33A-209ENST00000544349 ONECUT3O60422 494 aaPredicted RBP17.56■□□□□ 0.4
VPS33A-209ENST00000544349 INTS5Q6P9B9 1019 aaKnown RBP17.56■□□□□ 0.4
VPS33A-209ENST00000544349 ERC1Q8IUD2 1116 aa17.56■□□□□ 0.4
VPS33A-209ENST00000544349 KIF2CQ99661 725 aa17.56■□□□□ 0.4
VPS33A-209ENST00000544349 CDC45O75419 566 aa17.55■□□□□ 0.4
VPS33A-209ENST00000544349 CCDC87Q9NVE4 849 aa17.55■□□□□ 0.4
VPS33A-209ENST00000544349 SDSP20132 328 aa17.54■□□□□ 0.4
VPS33A-209ENST00000544349 CRKLP46109 303 aaKnown RBP17.54■□□□□ 0.4
VPS33A-209ENST00000544349 HLFQ16534 295 aa17.54■□□□□ 0.4
VPS33A-209ENST00000544349 RREB1Q92766 1687 aa17.54■□□□□ 0.4
VPS33A-209ENST00000544349 EIF5P55010 431 aaKnown RBP17.54■□□□□ 0.4
VPS33A-209ENST00000544349 FOXO4P98177 505 aa17.54■□□□□ 0.4
VPS33A-209ENST00000544349 G3BP1Q13283 466 aaKnown RBP eCLIP17.54■□□□□ 0.4
VPS33A-209ENST00000544349 HSCBQ8IWL3 235 aa17.54■□□□□ 0.4
VPS33A-209ENST00000544349 ZNF831Q5JPB2 1677 aa17.54■□□□□ 0.4
VPS33A-209ENST00000544349 ERVV-1B6SEH8 477 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 RFX5P48382 616 aaPredicted RBP17.53■□□□□ 0.4
VPS33A-209ENST00000544349 HSP90AB3PQ58FF7 597 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 TSHZ3Q63HK5 1081 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 DZIP3Q86Y13 1208 aaKnown RBP17.53■□□□□ 0.4
VPS33A-209ENST00000544349 NUTM1Q86Y26 1132 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 COPRSQ9NQ92 184 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 BRPF3Q9ULD4 1205 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 TUBGCP6Q96RT7 1819 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 AOX1Q06278 1338 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 MYH14Q7Z406 1995 aaKnown RBP17.53■□□□□ 0.4
VPS33A-209ENST00000544349 NUP98P52948 1817 aa17.53■□□□□ 0.4
VPS33A-209ENST00000544349 ANKRD36CQ5JPF3 1778 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 SASH1O94885 1247 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 CD2BP2O95400 341 aaKnown RBP17.52■□□□□ 0.4
VPS33A-209ENST00000544349 LMBR1LQ6UX01 489 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 PTF1AQ7RTS3 328 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 CLASRPQ8N2M8 674 aaKnown RBP17.52■□□□□ 0.4
VPS33A-209ENST00000544349 KLHDC4Q8TBB5 520 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 TBC1D2BQ9UPU7 963 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 NHSQ6T4R5 1651 aa17.52■□□□□ 0.4
VPS33A-209ENST00000544349 COL5A3P25940 1745 aaPredicted RBP17.52■□□□□ 0.39
VPS33A-209ENST00000544349 FAM182BQ5T319 152 aa17.51■□□□□ 0.39
VPS33A-209ENST00000544349 QTRT2Q9H974 415 aaKnown RBP17.51■□□□□ 0.39
VPS33A-209ENST00000544349 BTAF1O14981 1849 aa17.51■□□□□ 0.39
VPS33A-209ENST00000544349 PTPN12Q05209 780 aaKnown RBP17.51■□□□□ 0.39
VPS33A-209ENST00000544349 SIL1Q9H173 461 aa17.51■□□□□ 0.39
VPS33A-209ENST00000544349 PCCAP05165 728 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-209ENST00000544349 SEPT12Q8IYM1 358 aa17.5■□□□□ 0.39
VPS33A-209ENST00000544349 NLRP10Q86W26 655 aa17.5■□□□□ 0.39
VPS33A-209ENST00000544349 ZBTB38Q8NAP3 1195 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-209ENST00000544349 SNX21Q969T3 373 aa17.5■□□□□ 0.39
VPS33A-209ENST00000544349 GPTP24298 496 aa17.49■□□□□ 0.39
VPS33A-209ENST00000544349 DDIT3P35638 169 aa17.49■□□□□ 0.39
VPS33A-209ENST00000544349 CHMP5Q9NZZ3 219 aa17.49■□□□□ 0.39
VPS33A-209ENST00000544349 USP42Q9H9J4 1324 aaKnown RBP17.49■□□□□ 0.39
VPS33A-209ENST00000544349 PI4K2BQ8TCG2 481 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.48■□□□□ 0.39
VPS33A-209ENST00000544349 SBF2Q86WG5 1849 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 EIF5BO60841 1220 aaKnown RBP17.48■□□□□ 0.39
VPS33A-209ENST00000544349 LINC00116Q8NCU8 138 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 FAM89AQ96GI7 184 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 PLA2G12BQ9BX93 195 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 CHMP3Q9Y3E7 222 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 TTC41PQ6P2S7 1318 aa17.48■□□□□ 0.39
VPS33A-209ENST00000544349 CASC1Q6TDU7 716 aa17.47■□□□□ 0.39
VPS33A-209ENST00000544349 ZNF34Q8IZ26 560 aa17.47■□□□□ 0.39
VPS33A-209ENST00000544349 IFIT2P09913 472 aaKnown RBP17.47■□□□□ 0.39
VPS33A-209ENST00000544349 AACSQ86V21 672 aa17.47■□□□□ 0.39
VPS33A-209ENST00000544349 EAF2Q96CJ1 260 aaPredicted RBP17.47■□□□□ 0.39
VPS33A-209ENST00000544349 CDHR2Q9BYE9 1310 aa17.47■□□□□ 0.39
VPS33A-209ENST00000544349 TRIM6-TRIM34B2RNG4 842 aa17.46■□□□□ 0.39
VPS33A-209ENST00000544349 MCM4P33991 863 aa17.46■□□□□ 0.39
VPS33A-209ENST00000544349 CAMTA2O94983 1202 aa17.45■□□□□ 0.38
VPS33A-209ENST00000544349 KCNQ4P56696 695 aa17.45■□□□□ 0.38
VPS33A-209ENST00000544349 RILPL2Q969X0 211 aa17.45■□□□□ 0.38
VPS33A-209ENST00000544349 ECHDC1Q9NTX5 307 aa17.45■□□□□ 0.38
VPS33A-209ENST00000544349 UBN2Q6ZU65 1347 aa17.45■□□□□ 0.38
VPS33A-209ENST00000544349 CNTNAP4Q9C0A0 1308 aa17.45■□□□□ 0.38
VPS33A-209ENST00000544349 GLRX3O76003 335 aaKnown RBP17.44■□□□□ 0.38
VPS33A-209ENST00000544349 AK9Q5TCS8 1911 aa17.44■□□□□ 0.38
VPS33A-209ENST00000544349 GPATCH3Q96I76 525 aa17.44■□□□□ 0.38
VPS33A-209ENST00000544349 RTN4Q9NQC3 1192 aaKnown RBP17.44■□□□□ 0.38
VPS33A-209ENST00000544349 ERC2O15083 957 aa17.44■□□□□ 0.38
VPS33A-209ENST00000544349 CSF1RP07333 972 aa17.44■□□□□ 0.38
VPS33A-209ENST00000544349 SYNE4Q8N205 404 aa17.44■□□□□ 0.38
VPS33A-209ENST00000544349 CCDC8Q9H0W5 538 aaPredicted RBP17.44■□□□□ 0.38
VPS33A-209ENST00000544349 TRMT112Q9UI30 125 aaKnown RBP17.44■□□□□ 0.38
VPS33A-209ENST00000544349 TFCP2Q12800 502 aa17.43■□□□□ 0.38
VPS33A-209ENST00000544349 LY75O60449 1722 aa17.43■□□□□ 0.38
VPS33A-209ENST00000544349 RC3H1Q5TC82 1133 aaKnown RBP17.42■□□□□ 0.38
VPS33A-209ENST00000544349 ATG9AQ7Z3C6 839 aa17.42■□□□□ 0.38
VPS33A-209ENST00000544349 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
VPS33A-209ENST00000544349 CCDC57Q2TAC2 916 aa17.42■□□□□ 0.38
VPS33A-209ENST00000544349 IRS4O14654 1257 aaPredicted RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 MAP4K4O95819 1239 aaPredicted RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 CHMLP26374 656 aa17.41■□□□□ 0.38
VPS33A-209ENST00000544349 TNNI3KQ59H18 835 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms