RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 ZCRB1Q8TBF4 217 aaKnown RBP21.71■■□□□ 1.07
VIM-209ENST00000544301 BOLA2Q9H3K6 86 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 LIMCH1Q9UPQ0 1083 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 CCDC171Q6TFL3 1326 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 PCDH11XQ9BZA7 1347 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 PCDH11YQ9BZA8 1340 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 ATP5J2-PTCD1G3V325 749 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 PTCD1O75127 700 aaKnown RBP21.71■■□□□ 1.07
VIM-209ENST00000544301 CASTP20810 708 aaKnown RBP21.71■■□□□ 1.07
VIM-209ENST00000544301 NMIQ13287 307 aaPredicted RBP21.71■■□□□ 1.07
VIM-209ENST00000544301 PRPF40BQ6NWY9 871 aaKnown RBP21.71■■□□□ 1.07
VIM-209ENST00000544301 FAM227BQ96M60 508 aa21.71■■□□□ 1.07
VIM-209ENST00000544301 PTPN12Q05209 780 aaKnown RBP21.7■■□□□ 1.06
VIM-209ENST00000544301 TOM1L2Q6ZVM7 507 aa21.7■■□□□ 1.06
VIM-209ENST00000544301 RRAGDQ9NQL2 400 aaPredicted RBP21.7■■□□□ 1.06
VIM-209ENST00000544301 CPA1P15085 419 aa21.7■■□□□ 1.06
VIM-209ENST00000544301 NECTIN1Q15223 517 aa21.7■■□□□ 1.06
VIM-209ENST00000544301 SNRKQ9NRH2 765 aa21.7■■□□□ 1.06
VIM-209ENST00000544301 ERBB4Q15303 1308 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 A0A087WZG4 1122 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 NBPF26B4DH59 902 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 ADCK5Q3MIX3 580 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 NBPF14Q5TI25 921 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 NBPF10Q6P3W6 841 aaKnown RBP21.69■■□□□ 1.06
VIM-209ENST00000544301 NBPF15Q8N660 670 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 TM6SF1Q9BZW5 370 aa21.69■■□□□ 1.06
VIM-209ENST00000544301 WDR33Q9C0J8 1336 aaKnown RBP21.69■■□□□ 1.06
VIM-209ENST00000544301 CASP7P55210 303 aa21.68■■□□□ 1.06
VIM-209ENST00000544301 JAKMIP1Q96N16 626 aaKnown RBP21.68■■□□□ 1.06
VIM-209ENST00000544301 SOS2Q07890 1332 aaPredicted RBP21.68■■□□□ 1.06
VIM-209ENST00000544301 ERVV-2B6SEH9 535 aa21.68■■□□□ 1.06
VIM-209ENST00000544301 MAP4K1Q92918 833 aa21.68■■□□□ 1.06
VIM-209ENST00000544301 LARP6Q9BRS8 491 aaKnown RBP21.68■■□□□ 1.06
VIM-209ENST00000544301 FSD1Q9BTV5 496 aa21.68■■□□□ 1.06
VIM-209ENST00000544301 ZSWIM6Q9HCJ5 1215 aa21.68■■□□□ 1.06
VIM-209ENST00000544301 RBM27Q9P2N5 1060 aaKnown RBP21.68■■□□□ 1.06
VIM-209ENST00000544301 RBM8AQ9Y5S9 174 aaKnown RBP21.68■■□□□ 1.06
VIM-209ENST00000544301 COL5A2P05997 1499 aaPredicted RBP21.67■■□□□ 1.06
VIM-209ENST00000544301 VPS53Q5VIR6 699 aa21.67■■□□□ 1.06
VIM-209ENST00000544301 RPAP1Q9BWH6 1393 aaPredicted RBP21.67■■□□□ 1.06
VIM-209ENST00000544301 TFCP2Q12800 502 aa21.67■■□□□ 1.06
VIM-209ENST00000544301 PDRG1Q9NUG6 133 aa21.67■■□□□ 1.06
VIM-209ENST00000544301 A0A0D9SFI3 127 aa21.66■■□□□ 1.06
VIM-209ENST00000544301 TNNI3KQ59H18 835 aa21.66■■□□□ 1.06
VIM-209ENST00000544301 CREB3L3Q68CJ9 461 aa21.66■■□□□ 1.06
VIM-209ENST00000544301 SLAIN2Q9P270 581 aa21.66■■□□□ 1.06
VIM-209ENST00000544301 NSFL1CQ9UNZ2 370 aaKnown RBP21.66■■□□□ 1.06
VIM-209ENST00000544301 FPGT-TNNI3KV9GXZ4 949 aa21.66■■□□□ 1.06
VIM-209ENST00000544301 UBR2Q8IWV8 1755 aa21.66■■□□□ 1.06
VIM-209ENST00000544301 ZKSCAN1P17029 563 aaPredicted RBP21.65■■□□□ 1.06
VIM-209ENST00000544301 NKX1-1Q15270 411 aaPredicted RBP21.65■■□□□ 1.06
VIM-209ENST00000544301 DBNLQ9UJU6 430 aaKnown RBP21.65■■□□□ 1.06
VIM-209ENST00000544301 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.65■■□□□ 1.06
VIM-209ENST00000544301 CYP46A1Q9Y6A2 500 aa21.65■■□□□ 1.06
VIM-209ENST00000544301 MBD3O95983 291 aa21.65■■□□□ 1.06
VIM-209ENST00000544301 ATP5JP18859 108 aa21.65■■□□□ 1.06
VIM-209ENST00000544301 NASPP49321 788 aaPredicted RBP21.65■■□□□ 1.06
VIM-209ENST00000544301 MED23Q9ULK4 1368 aa21.64■■□□□ 1.06
VIM-209ENST00000544301 CARD10Q9BWT7 1032 aa21.64■■□□□ 1.06
VIM-209ENST00000544301 TMEM63CQ9P1W3 806 aa21.64■■□□□ 1.06
VIM-209ENST00000544301 KCPQ6ZWJ8 1503 aa21.64■■□□□ 1.05
VIM-209ENST00000544301 H7C1W4 665 aa21.64■■□□□ 1.05
VIM-209ENST00000544301 LARGE1O95461 756 aa21.64■■□□□ 1.05
VIM-209ENST00000544301 IL2RBP14784 551 aa21.64■■□□□ 1.05
VIM-209ENST00000544301 KCNJ4P48050 445 aa21.64■■□□□ 1.05
VIM-209ENST00000544301 TTLL7Q6ZT98 887 aa21.64■■□□□ 1.05
VIM-209ENST00000544301 SLC27A2O14975 620 aa21.63■■□□□ 1.05
VIM-209ENST00000544301 FOXO4P98177 505 aa21.63■■□□□ 1.05
VIM-209ENST00000544301 LMBR1LQ6UX01 489 aa21.63■■□□□ 1.05
VIM-209ENST00000544301 EDC3Q96F86 508 aaKnown RBP21.62■■□□□ 1.05
VIM-209ENST00000544301 ZSCAN31Q96LW9 406 aaPredicted RBP21.62■■□□□ 1.05
VIM-209ENST00000544301 PAPPAQ13219 1627 aa21.62■■□□□ 1.05
VIM-209ENST00000544301 A1BGP04217 495 aa21.62■■□□□ 1.05
VIM-209ENST00000544301 SMC3Q9UQE7 1217 aa21.62■■□□□ 1.05
VIM-209ENST00000544301 NUP188Q5SRE5 1749 aa21.62■■□□□ 1.05
VIM-209ENST00000544301 FOXD4L6Q3SYB3 417 aaPredicted RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 FOXD4L3Q6VB84 417 aaPredicted RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 SH2B1Q9NRF2 756 aaPredicted RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 ZSCAN22P10073 491 aaPredicted RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 PRIM1P49642 420 aaKnown RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 DDX54Q8TDD1 881 aaKnown RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 CWC25Q9NXE8 425 aaPredicted RBP21.61■■□□□ 1.05
VIM-209ENST00000544301 JCADQ9P266 1359 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 ABCA3Q99758 1704 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 STRCQ7RTU9 1775 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 SYT1P21579 422 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 ZNF589Q86UQ0 364 aaPredicted RBP21.6■■□□□ 1.05
VIM-209ENST00000544301 CCDC83Q8IWF9 413 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 DBNDD2Q9BQY9 259 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 SHANK3Q9BYB0 1731 aa21.6■■□□□ 1.05
VIM-209ENST00000544301 STX6O43752 255 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 PSMA5P28066 241 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 PPP1R9BQ96SB3 815 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 RBSNQ9H1K0 784 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 CCDC173Q0VFZ6 552 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 DNAJC5Q9H3Z4 198 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 TNS2Q63HR2 1409 aa21.59■■□□□ 1.05
VIM-209ENST00000544301 RNF20Q5VTR2 975 aa21.58■■□□□ 1.05
VIM-209ENST00000544301 LRSAM1Q6UWE0 723 aa21.58■■□□□ 1.05
VIM-209ENST00000544301 USP48Q86UV5 1035 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms