RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	UBN2	Q6ZU65	1347 aa		12.82	□□□□□ -0.36
CPSF7-221	ENST00000543545	POLRMT	O00411	1230 aa	Known RBP	12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	RLBP1	P12271	317 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	C20orf194	Q5TEA3	1177 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	INTS3	Q68E01	1043 aa	Known RBP	12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	NUTM1	Q86Y26	1132 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	CCDC24	Q8N4L8	307 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	CNBD1	Q8NA66	436 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	FAM89A	Q96GI7	184 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	COG6	Q9Y2V7	657 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	ABCC4	O15439	1325 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	CARMIL3	Q8ND23	1372 aa		12.81	□□□□□ -0.36
CPSF7-221	ENST00000543545	ATP10D	Q9P241	1426 aa		12.8	□□□□□ -0.36
CPSF7-221	ENST00000543545	ST5	P78524	1137 aa		12.8	□□□□□ -0.36
CPSF7-221	ENST00000543545	KLHL34	Q8N239	644 aa		12.8	□□□□□ -0.36
CPSF7-221	ENST00000543545	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.8	□□□□□ -0.36
CPSF7-221	ENST00000543545	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.8	□□□□□ -0.36
CPSF7-221	ENST00000543545	SH3TC1	Q8TE82	1336 aa		12.8	□□□□□ -0.36
CPSF7-221	ENST00000543545	GRM8	O00222	908 aa		12.79	□□□□□ -0.36
CPSF7-221	ENST00000543545	PCCA	P05165	728 aa	Predicted RBP	12.79	□□□□□ -0.36
CPSF7-221	ENST00000543545	ERFE	Q4G0M1	354 aa		12.79	□□□□□ -0.36
CPSF7-221	ENST00000543545	UBE3B	Q7Z3V4	1068 aa		12.79	□□□□□ -0.36
CPSF7-221	ENST00000543545	RNF123	Q5XPI4	1314 aa		12.79	□□□□□ -0.36
CPSF7-221	ENST00000543545	UBR3	Q6ZT12	1888 aa		12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545		H7C1W4	665 aa		12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	IRS4	O14654	1257 aa	Predicted RBP	12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	NTSR2	O95665	410 aa		12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	HCLS1	P14317	486 aa	Predicted RBP	12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	HSP90B1	P14625	803 aa	Known RBP	12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	MVP	Q14764	893 aa	Known RBP	12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	PRR5L	Q6MZQ0	368 aa		12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	SYNE4	Q8N205	404 aa		12.78	□□□□□ -0.36
CPSF7-221	ENST00000543545	GNAI3	P08754	354 aa		12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	UBTFL1	P0CB47	393 aa	Predicted RBP	12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	PTGER2	P43116	358 aa		12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	IRX6	P78412	446 aa	Predicted RBP	12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	USP44	Q9H0E7	712 aa		12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	CHMP4B	Q9H444	224 aa	Known RBP	12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	DDX19B	Q9UMR2	479 aa		12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	HDAC5	Q9UQL6	1122 aa		12.77	□□□□□ -0.37
CPSF7-221	ENST00000543545	NEFL	P07196	543 aa		12.76	□□□□□ -0.37
CPSF7-221	ENST00000543545	NBPF7	P0C2Y1	421 aa	Predicted RBP	12.76	□□□□□ -0.37
CPSF7-221	ENST00000543545	NLRP3	Q96P20	1036 aa		12.76	□□□□□ -0.37
CPSF7-221	ENST00000543545	CRBN	Q96SW2	442 aa		12.76	□□□□□ -0.37
CPSF7-221	ENST00000543545	MEIS3	Q99687	375 aa		12.76	□□□□□ -0.37
CPSF7-221	ENST00000543545	SLC10A5	Q5PT55	438 aa		12.75	□□□□□ -0.37
CPSF7-221	ENST00000543545	SGIP1	Q9BQI5	828 aa		12.75	□□□□□ -0.37
CPSF7-221	ENST00000543545	BRIP1	Q9BX63	1249 aa		12.75	□□□□□ -0.37
CPSF7-221	ENST00000543545	CHMP3	Q9Y3E7	222 aa		12.75	□□□□□ -0.37
CPSF7-221	ENST00000543545	PXDNL	A1KZ92	1463 aa		12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	ZBTB7B	O15156	539 aa	Predicted RBP	12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	PDE8A	O60658	829 aa		12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	GNAI2	P04899	355 aa		12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	PDE6B	P35913	854 aa		12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	SUCLG2	Q96I99	432 aa		12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.74	□□□□□ -0.37
CPSF7-221	ENST00000543545	CDHR2	Q9BYE9	1310 aa		12.73	□□□□□ -0.37
CPSF7-221	ENST00000543545	CASP7	P55210	303 aa		12.73	□□□□□ -0.37
CPSF7-221	ENST00000543545	C2CD5	Q86YS7	1000 aa		12.73	□□□□□ -0.37
CPSF7-221	ENST00000543545	C1orf115	Q9H7X2	142 aa		12.73	□□□□□ -0.37
CPSF7-221	ENST00000543545	LRRFIP2	Q9Y608	721 aa	Known RBP	12.73	□□□□□ -0.37
CPSF7-221	ENST00000543545	ABCC12	Q96J65	1359 aa		12.72	□□□□□ -0.37
CPSF7-221	ENST00000543545	UTY	O14607	1347 aa		12.72	□□□□□ -0.37
CPSF7-221	ENST00000543545		H0YIN7	160 aa		12.72	□□□□□ -0.37
CPSF7-221	ENST00000543545	CCDC152	Q4G0S7	254 aa		12.72	□□□□□ -0.37
CPSF7-221	ENST00000543545	C3orf67	Q6ZVT6	689 aa		12.72	□□□□□ -0.37
CPSF7-221	ENST00000543545	RPGR	Q92834	1020 aa	Known RBP	12.72	□□□□□ -0.37
CPSF7-221	ENST00000543545	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.72	□□□□□ -0.37	2e-6	■□□□□ 9.3
CPSF7-221	ENST00000543545	CTSW	P56202	376 aa		12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	EPHA10	Q5JZY3	1008 aa		12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	LMBR1L	Q6UX01	489 aa		12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	EXOC6	Q8TAG9	804 aa		12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	PLA2G12B	Q9BX93	195 aa		12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	BICC1	Q9H694	974 aa	Known RBP	12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	CD2AP	Q9Y5K6	639 aa		12.71	□□□□□ -0.37
CPSF7-221	ENST00000543545	TUBGCP6	Q96RT7	1819 aa		12.71	□□□□□ -0.38
CPSF7-221	ENST00000543545	C4A	P0C0L4	1744 aa		12.71	□□□□□ -0.38
CPSF7-221	ENST00000543545	SCN7A	Q01118	1682 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545		A0A0G2JLW4	131 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	CHRNA5	P30532	468 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	FOXO4	P98177	505 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	SF3B3	Q15393	1217 aa	Known RBP	12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	DDX46	Q7L014	1031 aa	Known RBP	12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	TTLL11	Q8NHH1	800 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	RBM17	Q96I25	401 aa	Known RBP	12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	ZBTB40	Q9NUA8	1239 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	PDZRN3	Q9UPQ7	1066 aa		12.7	□□□□□ -0.38
CPSF7-221	ENST00000543545	CACNA1F	O60840	1977 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	QSER1	Q2KHR3	1735 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	NPR1	P16066	1061 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	DPEP1	P16444	411 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	TGFB2	P61812	414 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	IFIT5	Q13325	482 aa	Known RBP	12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	CCDC57	Q2TAC2	916 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	TAF7L	Q5H9L4	462 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	KAZALD1	Q96I82	304 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	CASZ1	Q86V15	1759 aa		12.69	□□□□□ -0.38
CPSF7-221	ENST00000543545	ANKRD18B	A2A2Z9	1011 aa		12.68	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms