RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-221ENST00000543162 LRRFIP2Q9Y608 721 aaKnown RBP13.37□□□□□ -0.27
DDB1-221ENST00000543162 USP42Q9H9J4 1324 aaKnown RBP13.37□□□□□ -0.27
DDB1-221ENST00000543162 PARP10Q53GL7 1025 aa13.36□□□□□ -0.27
DDB1-221ENST00000543162 RPAP2Q8IXW5 612 aaPredicted RBP13.36□□□□□ -0.27
DDB1-221ENST00000543162 FLAD1Q8NFF5 587 aa13.36□□□□□ -0.27
DDB1-221ENST00000543162 NIP7Q9Y221 180 aaKnown RBP eCLIP13.36□□□□□ -0.27
DDB1-221ENST00000543162 H7C1W4 665 aa13.35□□□□□ -0.27
DDB1-221ENST00000543162 PCCAP05165 728 aaPredicted RBP13.35□□□□□ -0.27
DDB1-221ENST00000543162 HDAC1Q13547 482 aaPredicted RBP13.35□□□□□ -0.27
DDB1-221ENST00000543162 CEP85Q6P2H3 762 aa13.35□□□□□ -0.27
DDB1-221ENST00000543162 ANKRD44Q8N8A2 993 aa13.35□□□□□ -0.27
DDB1-221ENST00000543162 JARID2Q92833 1246 aaPredicted RBP13.35□□□□□ -0.27
DDB1-221ENST00000543162 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
DDB1-221ENST00000543162 STK32BQ9NY57 414 aa13.35□□□□□ -0.27
DDB1-221ENST00000543162 UBN2Q6ZU65 1347 aa13.35□□□□□ -0.27
DDB1-221ENST00000543162 MSH5O43196 834 aa13.34□□□□□ -0.27
DDB1-221ENST00000543162 IGHDP01880 384 aa13.34□□□□□ -0.27
DDB1-221ENST00000543162 CASP7P55210 303 aa13.34□□□□□ -0.27
DDB1-221ENST00000543162 RTL5Q5HYW3 569 aaPredicted RBP13.34□□□□□ -0.27
DDB1-221ENST00000543162 CENPQQ7L2Z9 268 aaPredicted RBP13.34□□□□□ -0.27
DDB1-221ENST00000543162 ZBTB38Q8NAP3 1195 aaPredicted RBP13.34□□□□□ -0.27
DDB1-221ENST00000543162 SUCLG2Q96I99 432 aa13.34□□□□□ -0.27
DDB1-221ENST00000543162 TRMT112Q9UI30 125 aaKnown RBP13.34□□□□□ -0.27
DDB1-221ENST00000543162 HMMRO75330 724 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 ATP8B2P98198 1209 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 SLC15A2Q16348 729 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 SUSD4Q5VX71 490 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 TBC1D9BQ66K14 1250 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 BICDL1Q6ZP65 573 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 PPP1R42Q7Z4L9 355 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 SIRT2Q8IXJ6 389 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 SETDB2Q96T68 719 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 UTP14AQ9BVJ6 771 aaKnown RBP13.33□□□□□ -0.28
DDB1-221ENST00000543162 ANO8Q9HCE9 1232 aaPredicted RBP13.33□□□□□ -0.28
DDB1-221ENST00000543162 TUBGCP6Q96RT7 1819 aa13.33□□□□□ -0.28
DDB1-221ENST00000543162 FAM177BA6PVY3 158 aa13.32□□□□□ -0.28
DDB1-221ENST00000543162 GYS1P13807 737 aa13.32□□□□□ -0.28
DDB1-221ENST00000543162 COL23A1Q86Y22 540 aaPredicted RBP13.32□□□□□ -0.28
DDB1-221ENST00000543162 UPF1Q92900 1129 aaKnown RBP eCLIP13.32□□□□□ -0.28
DDB1-221ENST00000543162 FAM89AQ96GI7 184 aa13.32□□□□□ -0.28
DDB1-221ENST00000543162 KAZALD1Q96I82 304 aa13.32□□□□□ -0.28
DDB1-221ENST00000543162 BICC1Q9H694 974 aaKnown RBP13.32□□□□□ -0.28
DDB1-221ENST00000543162 PNPLA7Q6ZV29 1317 aa13.32□□□□□ -0.28
DDB1-221ENST00000543162 KDM2BQ8NHM5 1336 aa13.32□□□□□ -0.28
DDB1-221ENST00000543162 MTX1Q13505 466 aa13.31□□□□□ -0.28
DDB1-221ENST00000543162 SH3TC1Q8TE82 1336 aa13.31□□□□□ -0.28
DDB1-221ENST00000543162 CDHR2Q9BYE9 1310 aa13.31□□□□□ -0.28
DDB1-221ENST00000543162 PNMA6EA0A0J9YXQ4 647 aa13.3□□□□□ -0.28
DDB1-221ENST00000543162 SRGAP3O43295 1099 aa13.3□□□□□ -0.28
DDB1-221ENST00000543162 NTSR2O95665 410 aa13.3□□□□□ -0.28
DDB1-221ENST00000543162 EPHA10Q5JZY3 1008 aa13.3□□□□□ -0.28
DDB1-221ENST00000543162 NYXQ9GZU5 481 aa13.3□□□□□ -0.28
DDB1-221ENST00000543162 IRS4O14654 1257 aaPredicted RBP13.29□□□□□ -0.28
DDB1-221ENST00000543162 HSP90B1P14625 803 aaKnown RBP13.29□□□□□ -0.28
DDB1-221ENST00000543162 GTF2E1P29083 439 aaPredicted RBP13.29□□□□□ -0.28
DDB1-221ENST00000543162 FOXO4P98177 505 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 NFIXQ14938 502 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 RABL6Q3YEC7 729 aaPredicted RBP13.29□□□□□ -0.28
DDB1-221ENST00000543162 NBPF5PQ86XG9 351 aaPredicted RBP13.29□□□□□ -0.28
DDB1-221ENST00000543162 SYNE4Q8N205 404 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 SSH3Q8TE77 659 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 PLA2G12BQ9BX93 195 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 QSER1Q2KHR3 1735 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 CARMIL3Q8ND23 1372 aa13.29□□□□□ -0.28
DDB1-221ENST00000543162 COL24A1Q17RW2 1714 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 POLA2Q14181 598 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 LMBR1LQ6UX01 489 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 TPTE2Q6XPS3 522 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 NUTM1Q86Y26 1132 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 SMC5Q8IY18 1101 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 NLGN1Q8N2Q7 840 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 GCC1Q96CN9 775 aa13.28□□□□□ -0.28
DDB1-221ENST00000543162 NPHP1O15259 732 aa13.27□□□□□ -0.29
DDB1-221ENST00000543162 PDE8AO60658 829 aa13.27□□□□□ -0.29
DDB1-221ENST00000543162 HCLS1P14317 486 aaPredicted RBP13.27□□□□□ -0.29
DDB1-221ENST00000543162 TM4SF1P30408 202 aa13.27□□□□□ -0.29
DDB1-221ENST00000543162 DCTPP1Q9H773 170 aa13.27□□□□□ -0.29
DDB1-221ENST00000543162 CHMP3Q9Y3E7 222 aa13.27□□□□□ -0.29
DDB1-221ENST00000543162 CTSWP56202 376 aa13.26□□□□□ -0.29
DDB1-221ENST00000543162 ERFEQ4G0M1 354 aa13.26□□□□□ -0.29
DDB1-221ENST00000543162 MYH3P11055 1940 aa13.25□□□□□ -0.29
DDB1-221ENST00000543162 SURF6O75683 361 aaKnown RBP13.25□□□□□ -0.29
DDB1-221ENST00000543162 CSF1RP07333 972 aa13.25□□□□□ -0.29
DDB1-221ENST00000543162 CNBD1Q8NA66 436 aa13.25□□□□□ -0.29
DDB1-221ENST00000543162 EXOC6BQ9Y2D4 811 aa13.25□□□□□ -0.29
DDB1-221ENST00000543162 LAMB2P55268 1798 aa13.25□□□□□ -0.29
DDB1-221ENST00000543162 DDX60Q8IY21 1712 aaKnown RBP13.25□□□□□ -0.29
DDB1-221ENST00000543162 SERPINB2P05120 415 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 DDR1Q08345 913 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 CCDC57Q2TAC2 916 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 HSP90AB4PQ58FF6 505 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 SLC10A5Q5PT55 438 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 ANKRD45Q5TZF3 282 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 MSL1Q68DK7 614 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 ILDR2Q71H61 639 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 TTLL11Q8NHH1 800 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 ZBTB47Q9UFB7 747 aaPredicted RBP13.24□□□□□ -0.29
DDB1-221ENST00000543162 PDZRN3Q9UPQ7 1066 aa13.24□□□□□ -0.29
DDB1-221ENST00000543162 ABCC12Q96J65 1359 aa13.23□□□□□ -0.29
DDB1-221ENST00000543162 APBB1O00213 710 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms