RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 LTBP1Q14766 1721 aa11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 TCERG1O14776 1098 aaKnown RBP11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 SNRPA1P09661 255 aaKnown RBP11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 PRKAR2BP31323 418 aa11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 ECE1P42892 770 aa11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 MLLT1Q03111 559 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 NGEFQ8N5V2 710 aa11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 CAPNS2Q96L46 248 aa11.47□□□□□ -0.57
CLSTN3-212ENST00000541770 NUP98P52948 1817 aa11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 CEMIPQ8WUJ3 1361 aa11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 NUTM1Q86Y26 1132 aa11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 RTF1Q92541 710 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 PHACTR3Q96KR7 559 aa11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 GPR101Q96P66 508 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 PNNQ9H307 717 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-212ENST00000541770 KLRG2A4D1S0 409 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 EPS15P42566 896 aa11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 WDR43Q15061 677 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 HLFQ16534 295 aa11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 MCM10Q7L590 875 aa11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 LARGE2Q8N3Y3 721 aa11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 RPGRQ92834 1020 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 LAMB4A4D0S4 1761 aa11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 THSD7BQ9C0I4 1608 aa11.45□□□□□ -0.58
CLSTN3-212ENST00000541770 COL4A5P29400 1685 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 NBPF26B4DH59 902 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 TRAF5O00463 557 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 AOC2O75106 756 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 DCTN1Q14203 1278 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 CCDC184Q52MB2 194 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 NBPF10Q6P3W6 841 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 NBPF15Q8N660 670 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 PLEKHF1Q96S99 279 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 PSMD1Q99460 953 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 MRS2Q9HD23 443 aa11.44□□□□□ -0.58
CLSTN3-212ENST00000541770 ABCC12Q96J65 1359 aa11.43□□□□□ -0.58
CLSTN3-212ENST00000541770 SCNN1DP51172 638 aa11.43□□□□□ -0.58
CLSTN3-212ENST00000541770 NIM1KQ8IY84 436 aa11.43□□□□□ -0.58
CLSTN3-212ENST00000541770 NYXQ9GZU5 481 aa11.43□□□□□ -0.58
CLSTN3-212ENST00000541770 CASP8AP2Q9UKL3 1982 aa11.43□□□□□ -0.58
CLSTN3-212ENST00000541770 CCER2I3L3R5 266 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 NEFMP07197 916 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 GPTP24298 496 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 CST9Q5W186 159 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 CC2D2BQ6DHV5 1058 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 USP50Q70EL3 339 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 PNISRQ8TF01 805 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 ZNF408Q9H9D4 720 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 ADAMTS8Q9UP79 889 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 TLL2Q9Y6L7 1015 aa11.42□□□□□ -0.58
CLSTN3-212ENST00000541770 PPEF1O14829 653 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 PPIP5K2O43314 1243 aa11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 KIF6Q6ZMV9 814 aa11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 SLC51AQ86UW1 340 aa11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 RBM17Q96I25 401 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 TMX4Q9H1E5 349 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 MIS18AQ9NYP9 233 aa11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 RRP7AQ9Y3A4 280 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 DLG5Q8TDM6 1919 aa11.41□□□□□ -0.58
CLSTN3-212ENST00000541770 MAPK8IP3Q9UPT6 1336 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 CELF2O95319 508 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 MYL6BP14649 208 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 AOC3Q16853 763 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 RUNDC1Q96C34 613 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 MCOLN1Q9GZU1 580 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 ZBTB3Q9H5J0 574 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 SNED1Q8TER0 1413 aa11.4□□□□□ -0.58
CLSTN3-212ENST00000541770 RGL2O15211 777 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 HTATSF1O43719 755 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 MAP2K2P36507 400 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 DGKZQ13574 1117 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 CRY2Q49AN0 593 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 TTLL7Q6ZT98 887 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 GLIS2Q9BZE0 524 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 ADARB2Q9NS39 739 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 PCDH10Q9P2E7 1040 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 KDM3BQ7LBC6 1761 aa11.39□□□□□ -0.59
CLSTN3-212ENST00000541770 MAP3K15Q6ZN16 1313 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 RGS19P49795 217 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 TAF7Q15545 349 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 NFE2L2Q16236 605 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 GRIPAP1Q4V328 841 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 SUSD4Q5VX71 490 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 BCL2L13Q9BXK5 485 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 GPRC5DQ9NZD1 345 aa11.38□□□□□ -0.59
CLSTN3-212ENST00000541770 ERVV-1B6SEH8 477 aa11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 HOXA10P31260 410 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 GMPSP49915 693 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 CIAPIN1Q6FI81 312 aa11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 SAPCD2Q86UD0 394 aa11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 MIER1Q8N108 512 aa11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 CRAMP1Q96RY5 1269 aa11.37□□□□□ -0.59
CLSTN3-212ENST00000541770 UBN2Q6ZU65 1347 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 LAMB2P55268 1798 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 RIC1Q4ADV7 1423 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 CA12O43570 354 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 TMPOP42166 694 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 CXCL9Q07325 125 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 C3orf67Q6ZVT6 689 aa11.36□□□□□ -0.59
CLSTN3-212ENST00000541770 PPP1R42Q7Z4L9 355 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms