RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 A0A087WZG4 1122 aa11.85□□□□□ -0.51
DDX55-208ENST00000541259 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
DDX55-208ENST00000541259 PDE3AQ14432 1141 aa11.85□□□□□ -0.51
DDX55-208ENST00000541259 SLC15A2Q16348 729 aa11.85□□□□□ -0.51
DDX55-208ENST00000541259 FTSJ3Q8IY81 847 aaKnown RBP11.85□□□□□ -0.51
DDX55-208ENST00000541259 CRBNQ96SW2 442 aa11.85□□□□□ -0.51
DDX55-208ENST00000541259 MYD88Q99836 296 aa11.85□□□□□ -0.51
DDX55-208ENST00000541259 COG6Q9Y2V7 657 aa11.85□□□□□ -0.51
DDX55-208ENST00000541259 ATP5J2-PTCD1G3V325 749 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 RIOK3O14730 519 aaKnown RBP11.84□□□□□ -0.51
DDX55-208ENST00000541259 SSFA2P28290 1259 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 BEND3Q5T5X7 828 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 USPL1Q5W0Q7 1092 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 INTS3Q68E01 1043 aaKnown RBP11.84□□□□□ -0.51
DDX55-208ENST00000541259 COL23A1Q86Y22 540 aaPredicted RBP11.84□□□□□ -0.51
DDX55-208ENST00000541259 METTL22Q9BUU2 404 aaPredicted RBP11.84□□□□□ -0.51
DDX55-208ENST00000541259 BCL2L12Q9HB09 334 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 STK32BQ9NY57 414 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 NARFQ9UHQ1 456 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 PNPLA7Q6ZV29 1317 aa11.84□□□□□ -0.51
DDX55-208ENST00000541259 ERVV-1B6SEH8 477 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 IGKV5-2P06315 115 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 MS4A1P11836 297 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 HMGB2P26583 209 aaKnown RBP11.83□□□□□ -0.52
DDX55-208ENST00000541259 RFC4P35249 363 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 CWF19L2Q2TBE0 894 aaKnown RBP11.83□□□□□ -0.52
DDX55-208ENST00000541259 GIGYF2Q6Y7W6 1299 aaKnown RBP11.83□□□□□ -0.52
DDX55-208ENST00000541259 ITPRIPQ8IWB1 547 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 EXOC6Q8TAG9 804 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 PXDNLA1KZ92 1463 aa11.83□□□□□ -0.52
DDX55-208ENST00000541259 ZPR1O75312 459 aa11.82□□□□□ -0.52
DDX55-208ENST00000541259 GPTP24298 496 aa11.82□□□□□ -0.52
DDX55-208ENST00000541259 TCIRG1Q13488 830 aa11.82□□□□□ -0.52
DDX55-208ENST00000541259 MVPQ14764 893 aaKnown RBP11.82□□□□□ -0.52
DDX55-208ENST00000541259 ATP10DQ9P241 1426 aa11.82□□□□□ -0.52
DDX55-208ENST00000541259 USP42Q9H9J4 1324 aaKnown RBP11.82□□□□□ -0.52
DDX55-208ENST00000541259 NEURL1BA8MQ27 555 aa11.81□□□□□ -0.52
DDX55-208ENST00000541259 CCT4P50991 539 aaKnown RBP11.81□□□□□ -0.52
DDX55-208ENST00000541259 LINS1Q8NG48 757 aa11.81□□□□□ -0.52
DDX55-208ENST00000541259 ISCA1Q9BUE6 129 aa11.81□□□□□ -0.52
DDX55-208ENST00000541259 SRCIN1Q9C0H9 1055 aa11.81□□□□□ -0.52
DDX55-208ENST00000541259 PDGFDQ9GZP0 370 aaPredicted RBP11.81□□□□□ -0.52
DDX55-208ENST00000541259 GYS1P13807 737 aa11.8□□□□□ -0.52
DDX55-208ENST00000541259 NEXNQ0ZGT2 675 aa11.8□□□□□ -0.52
DDX55-208ENST00000541259 TBC1D9BQ66K14 1250 aa11.8□□□□□ -0.52
DDX55-208ENST00000541259 ZNF34Q8IZ26 560 aa11.8□□□□□ -0.52
DDX55-208ENST00000541259 JARID2Q92833 1246 aaPredicted RBP11.8□□□□□ -0.52
DDX55-208ENST00000541259 RNF25Q96BH1 459 aaPredicted RBP11.8□□□□□ -0.52
DDX55-208ENST00000541259 ZBTB7BO15156 539 aaPredicted RBP11.79□□□□□ -0.52
DDX55-208ENST00000541259 ALDH1L1O75891 902 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 NEFLP07196 543 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 GCKRQ14397 625 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 CLEC4GQ6UXB4 293 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 BICDL1Q6ZP65 573 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 FLAD1Q8NFF5 587 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 MEIS3Q99687 375 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 USP44Q9H0E7 712 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 NIP7Q9Y221 180 aaKnown RBP eCLIP11.79□□□□□ -0.52
DDX55-208ENST00000541259 UBN2Q6ZU65 1347 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 CASZ1Q86V15 1759 aa11.79□□□□□ -0.52
DDX55-208ENST00000541259 COL24A1Q17RW2 1714 aa11.78□□□□□ -0.52
DDX55-208ENST00000541259 FAM177BA6PVY3 158 aa11.78□□□□□ -0.52
DDX55-208ENST00000541259 TRIM28Q13263 835 aaKnown RBP11.78□□□□□ -0.52
DDX55-208ENST00000541259 HSP90AB3PQ58FF7 597 aa11.78□□□□□ -0.52
DDX55-208ENST00000541259 ZNF467Q7Z7K2 595 aaPredicted RBP11.78□□□□□ -0.52
DDX55-208ENST00000541259 CWC25Q9NXE8 425 aaPredicted RBP11.78□□□□□ -0.52
DDX55-208ENST00000541259 DDX19BQ9UMR2 479 aa11.78□□□□□ -0.52
DDX55-208ENST00000541259 ZNF652Q9Y2D9 606 aa11.78□□□□□ -0.52
DDX55-208ENST00000541259 MYH3P11055 1940 aa11.78□□□□□ -0.52
DDX55-208ENST00000541259 NBPF7P0C2Y1 421 aaPredicted RBP11.77□□□□□ -0.53
DDX55-208ENST00000541259 NFIXQ14938 502 aa11.77□□□□□ -0.53
DDX55-208ENST00000541259 R3HDM1Q15032 1099 aaKnown RBP11.77□□□□□ -0.53
DDX55-208ENST00000541259 RTL5Q5HYW3 569 aaPredicted RBP11.77□□□□□ -0.53
DDX55-208ENST00000541259 SUSD4Q5VX71 490 aa11.77□□□□□ -0.53
DDX55-208ENST00000541259 SYNE4Q8N205 404 aa11.77□□□□□ -0.53
DDX55-208ENST00000541259 CCDC191Q8NCU4 936 aa11.77□□□□□ -0.53
DDX55-208ENST00000541259 C1orf115Q9H7X2 142 aa11.77□□□□□ -0.53
DDX55-208ENST00000541259 PSDA5PKW4 1024 aaPredicted RBP11.76□□□□□ -0.53
DDX55-208ENST00000541259 H7C1W4 665 aa11.76□□□□□ -0.53
DDX55-208ENST00000541259 TM4SF1P30408 202 aa11.76□□□□□ -0.53
DDX55-208ENST00000541259 CASP7P55210 303 aa11.76□□□□□ -0.53
DDX55-208ENST00000541259 MSL1Q68DK7 614 aa11.76□□□□□ -0.53
DDX55-208ENST00000541259 SETDB2Q96T68 719 aa11.76□□□□□ -0.53
DDX55-208ENST00000541259 ZBTB40Q9NUA8 1239 aa11.76□□□□□ -0.53
DDX55-208ENST00000541259 C9orf78Q9NZ63 289 aaPredicted RBP11.76□□□□□ -0.53
DDX55-208ENST00000541259 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.76□□□□□ -0.53
DDX55-208ENST00000541259 DDX60Q8IY21 1712 aaKnown RBP11.76□□□□□ -0.53
DDX55-208ENST00000541259 LAMB2P55268 1798 aa11.75□□□□□ -0.53
DDX55-208ENST00000541259 GRM8O00222 908 aa11.75□□□□□ -0.53
DDX55-208ENST00000541259 UBE3BQ7Z3V4 1068 aa11.75□□□□□ -0.53
DDX55-208ENST00000541259 FAM89AQ96GI7 184 aa11.75□□□□□ -0.53
DDX55-208ENST00000541259 TRMT112Q9UI30 125 aaKnown RBP11.75□□□□□ -0.53
DDX55-208ENST00000541259 UTYO14607 1347 aa11.75□□□□□ -0.53
DDX55-208ENST00000541259 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 NTSR2O95665 410 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 PCCAP05165 728 aaPredicted RBP11.74□□□□□ -0.53
DDX55-208ENST00000541259 UBTFL1P0CB47 393 aaPredicted RBP11.74□□□□□ -0.53
DDX55-208ENST00000541259 DDR1Q08345 913 aa11.74□□□□□ -0.53
DDX55-208ENST00000541259 PARP10Q53GL7 1025 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms