RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CRY2Q49AN0 593 aa16.89■□□□□ 0.29
LTBR-208ENST00000541005 NLRP10Q86W26 655 aa16.89■□□□□ 0.29
LTBR-208ENST00000541005 CNKSR1Q969H4 720 aa16.89■□□□□ 0.29
LTBR-208ENST00000541005 FAM177BA6PVY3 158 aa16.88■□□□□ 0.29
LTBR-208ENST00000541005 NPR1P16066 1061 aa16.88■□□□□ 0.29
LTBR-208ENST00000541005 ERFEQ4G0M1 354 aa16.88■□□□□ 0.29
LTBR-208ENST00000541005 NUTM1Q86Y26 1132 aa16.88■□□□□ 0.29
LTBR-208ENST00000541005 ISCA1Q9BUE6 129 aa16.88■□□□□ 0.29
LTBR-208ENST00000541005 UTP14AQ9BVJ6 771 aaKnown RBP16.88■□□□□ 0.29
LTBR-208ENST00000541005 PHAXQ9H814 394 aaKnown RBP16.88■□□□□ 0.29
LTBR-208ENST00000541005 VAMP4O75379 141 aa16.87■□□□□ 0.29
LTBR-208ENST00000541005 GTF2E1P29083 439 aaPredicted RBP16.87■□□□□ 0.29
LTBR-208ENST00000541005 EXOSC9Q06265 439 aaKnown RBP16.87■□□□□ 0.29
LTBR-208ENST00000541005 TRIM28Q13263 835 aaKnown RBP16.87■□□□□ 0.29
LTBR-208ENST00000541005 SLC10A5Q5PT55 438 aa16.87■□□□□ 0.29
LTBR-208ENST00000541005 ZNF622Q969S3 477 aaKnown RBP eCLIP16.87■□□□□ 0.29
LTBR-208ENST00000541005 STK31Q9BXU1 1019 aa16.87■□□□□ 0.29
LTBR-208ENST00000541005 TAF1P21675 1872 aa16.86■□□□□ 0.29
LTBR-208ENST00000541005 ARHGAP27Q6ZUM4 889 aa16.86■□□□□ 0.29
LTBR-208ENST00000541005 MIER1Q8N108 512 aa16.86■□□□□ 0.29
LTBR-208ENST00000541005 ZNF784Q8NCA9 323 aaPredicted RBP16.86■□□□□ 0.29
LTBR-208ENST00000541005 DDX58O95786 925 aaKnown RBP16.85■□□□□ 0.29
LTBR-208ENST00000541005 PRPF40BQ6NWY9 871 aaKnown RBP16.85■□□□□ 0.29
LTBR-208ENST00000541005 E9PSI1 815 aa16.84■□□□□ 0.29
LTBR-208ENST00000541005 HOXA10P31260 410 aaPredicted RBP16.84■□□□□ 0.29
LTBR-208ENST00000541005 RIC3Q7Z5B4 369 aa16.84■□□□□ 0.29
LTBR-208ENST00000541005 SH3TC1Q8TE82 1336 aa16.84■□□□□ 0.29
LTBR-208ENST00000541005 LRRC37AA6NMS7 1700 aa16.84■□□□□ 0.29
LTBR-208ENST00000541005 SOGA3Q5TF21 947 aa16.83■□□□□ 0.28
LTBR-208ENST00000541005 SNED1Q8TER0 1413 aa16.83■□□□□ 0.28
LTBR-208ENST00000541005 C7orf43Q8WVR3 580 aa16.83■□□□□ 0.28
LTBR-208ENST00000541005 LTBP3Q9NS15 1303 aa16.82■□□□□ 0.28
LTBR-208ENST00000541005 SLC4A2P04920 1241 aa16.82■□□□□ 0.28
LTBR-208ENST00000541005 ALDH1B1P30837 517 aa16.82■□□□□ 0.28
LTBR-208ENST00000541005 KSR2Q6VAB6 950 aa16.82■□□□□ 0.28
LTBR-208ENST00000541005 METTL22Q9BUU2 404 aaPredicted RBP16.82■□□□□ 0.28
LTBR-208ENST00000541005 TRMT112Q9UI30 125 aaKnown RBP16.82■□□□□ 0.28
LTBR-208ENST00000541005 ATP5J2-PTCD1G3V325 749 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 NFKBIEO00221 500 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 TCERG1O14776 1098 aaKnown RBP16.81■□□□□ 0.28
LTBR-208ENST00000541005 C21orf2O43822 256 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 SLFN5Q08AF3 891 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 FLIIQ13045 1269 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 C3orf67Q6ZVT6 689 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 G2E3Q7L622 706 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 CCDC191Q8NCU4 936 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 NLRP3Q96P20 1036 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 CRAMP1Q96RY5 1269 aa16.81■□□□□ 0.28
LTBR-208ENST00000541005 ZC3H4Q9UPT8 1303 aaKnown RBP16.8■□□□□ 0.28
LTBR-208ENST00000541005 PI4KAP2A4QPH2 592 aa16.8■□□□□ 0.28
LTBR-208ENST00000541005 TRMT2AQ8IZ69 625 aaKnown RBP16.8■□□□□ 0.28
LTBR-208ENST00000541005 PI4KAP1Q8N8J0 262 aa16.8■□□□□ 0.28
LTBR-208ENST00000541005 RPGRQ92834 1020 aaKnown RBP16.8■□□□□ 0.28
LTBR-208ENST00000541005 MAP3K2Q9Y2U5 619 aa16.8■□□□□ 0.28
LTBR-208ENST00000541005 LMNB1P20700 586 aa16.79■□□□□ 0.28
LTBR-208ENST00000541005 RASSF7Q02833 373 aa16.79■□□□□ 0.28
LTBR-208ENST00000541005 C9orf131Q5VYM1 1079 aa16.79■□□□□ 0.28
LTBR-208ENST00000541005 SYNE4Q8N205 404 aa16.79■□□□□ 0.28
LTBR-208ENST00000541005 ZBTB38Q8NAP3 1195 aaPredicted RBP16.79■□□□□ 0.28
LTBR-208ENST00000541005 MYD88Q99836 296 aa16.79■□□□□ 0.28
LTBR-208ENST00000541005 HCLS1P14317 486 aaPredicted RBP16.78■□□□□ 0.28
LTBR-208ENST00000541005 PRELPP51888 382 aa16.78■□□□□ 0.28
LTBR-208ENST00000541005 CCDC93Q567U6 631 aa16.78■□□□□ 0.28
LTBR-208ENST00000541005 RBM17Q96I25 401 aaKnown RBP16.78■□□□□ 0.28
LTBR-208ENST00000541005 CWC25Q9NXE8 425 aaPredicted RBP16.78■□□□□ 0.28
LTBR-208ENST00000541005 IGKV5-2P06315 115 aa16.77■□□□□ 0.28
LTBR-208ENST00000541005 ZNF428Q96B54 188 aa16.77■□□□□ 0.28
LTBR-208ENST00000541005 FAM89AQ96GI7 184 aa16.77■□□□□ 0.28
LTBR-208ENST00000541005 TAOK3Q9H2K8 898 aa16.77■□□□□ 0.28
LTBR-208ENST00000541005 RNF181Q9P0P0 153 aa16.77■□□□□ 0.28
LTBR-208ENST00000541005 LTBP1Q14766 1721 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 ABCC4O15439 1325 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 COL4A1P02462 1669 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 SPEF2Q9C093 1822 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 PCCAP05165 728 aaPredicted RBP16.76■□□□□ 0.27
LTBR-208ENST00000541005 NEXNQ0ZGT2 675 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 FKBP5Q13451 457 aaPredicted RBP16.76■□□□□ 0.27
LTBR-208ENST00000541005 CC2D2BQ6DHV5 1058 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 CDCA7LQ96GN5 454 aa16.76■□□□□ 0.27
LTBR-208ENST00000541005 ZNF219Q9P2Y4 722 aaPredicted RBP16.76■□□□□ 0.27
LTBR-208ENST00000541005 CDHR2Q9BYE9 1310 aa16.75■□□□□ 0.27
LTBR-208ENST00000541005 IRS4O14654 1257 aaPredicted RBP16.75■□□□□ 0.27
LTBR-208ENST00000541005 HSP90B1P14625 803 aaKnown RBP16.75■□□□□ 0.27
LTBR-208ENST00000541005 SF3B3Q15393 1217 aaKnown RBP16.75■□□□□ 0.27
LTBR-208ENST00000541005 GRIPAP1Q4V328 841 aa16.75■□□□□ 0.27
LTBR-208ENST00000541005 RTKN2Q8IZC4 609 aa16.75■□□□□ 0.27
LTBR-208ENST00000541005 DNAAF4Q8WXU2 420 aa16.75■□□□□ 0.27
LTBR-208ENST00000541005 NEURL1BA8MQ27 555 aa16.74■□□□□ 0.27
LTBR-208ENST00000541005 FKBP4Q02790 459 aaKnown RBP eCLIP16.74■□□□□ 0.27
LTBR-208ENST00000541005 WDR90Q96KV7 1748 aa16.73■□□□□ 0.27
LTBR-208ENST00000541005 PPEF1O14829 653 aaPredicted RBP16.73■□□□□ 0.27
LTBR-208ENST00000541005 CT47B1P0C2W7 299 aaPredicted RBP16.73■□□□□ 0.27
LTBR-208ENST00000541005 OLFM4Q6UX06 510 aa16.73■□□□□ 0.27
LTBR-208ENST00000541005 PSMD1Q99460 953 aa16.73■□□□□ 0.27
LTBR-208ENST00000541005 BBOX1O75936 387 aa16.72■□□□□ 0.27
LTBR-208ENST00000541005 GRAPQ13588 217 aa16.72■□□□□ 0.27
LTBR-208ENST00000541005 CWF19L2Q2TBE0 894 aaKnown RBP16.72■□□□□ 0.27
LTBR-208ENST00000541005 DDX46Q7L014 1031 aaKnown RBP16.72■□□□□ 0.27
LTBR-208ENST00000541005 LINS1Q8NG48 757 aa16.72■□□□□ 0.27
LTBR-208ENST00000541005 GRAPLQ8TC17 118 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms