RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 TBC1D2BQ9UPU7 963 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 ANKRD36CQ5JPF3 1778 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 NUP98P52948 1817 aa15.15■□□□□ 0.02
AP003559.1-201ENST00000540906 NHSQ6T4R5 1651 aa15.14■□□□□ 0.01
AP003559.1-201ENST00000540906 KIF6Q6ZMV9 814 aa15.14■□□□□ 0.01
AP003559.1-201ENST00000540906 SYNE4Q8N205 404 aa15.14■□□□□ 0.01
AP003559.1-201ENST00000540906 CCDC191Q8NCU4 936 aa15.14■□□□□ 0.01
AP003559.1-201ENST00000540906 STAP2Q9UGK3 403 aa15.14■□□□□ 0.01
AP003559.1-201ENST00000540906 GPTP24298 496 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 GIGYF2Q6Y7W6 1299 aaKnown RBP15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 CCDC87Q9NVE4 849 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 CDC45O75419 566 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 SLC4A3P48751 1232 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 EIF5P55010 431 aaKnown RBP15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 PTPN12Q05209 780 aaKnown RBP15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 OS9Q13438 667 aaPredicted RBP15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 LMBR1LQ6UX01 489 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 SMIM5Q71RC9 77 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 HDAC5Q9UQL6 1122 aa15.13■□□□□ 0.01
AP003559.1-201ENST00000540906 SBF2Q86WG5 1849 aa15.12■□□□□ 0.01
AP003559.1-201ENST00000540906 IL6STP40189 918 aaPredicted RBP15.12■□□□□ 0.01
AP003559.1-201ENST00000540906 DZIP3Q86Y13 1208 aaKnown RBP15.12■□□□□ 0.01
AP003559.1-201ENST00000540906 LINC00116Q8NCU8 138 aa15.12■□□□□ 0.01
AP003559.1-201ENST00000540906 PI4K2BQ8TCG2 481 aa15.12■□□□□ 0.01
AP003559.1-201ENST00000540906 SEPT12Q8IYM1 358 aa15.11■□□□□ 0.01
AP003559.1-201ENST00000540906 UBN2Q6ZU65 1347 aa15.11■□□□□ 0.01
AP003559.1-201ENST00000540906 ONECUT3O60422 494 aaPredicted RBP15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 RXRBP28702 533 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 TRIM28Q13263 835 aaKnown RBP15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 NLRP10Q86W26 655 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 FAM89AQ96GI7 184 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 C22orf23Q9BZE7 217 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 COPRSQ9NQ92 184 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 ZNF831Q5JPB2 1677 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 MAP4K4O95819 1239 aaPredicted RBP15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 HSP90AB4PQ58FF6 505 aa15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 SMARCC1Q92922 1105 aaPredicted RBP15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 EAF2Q96CJ1 260 aaPredicted RBP15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 TLR7Q9NYK1 1049 aaKnown RBP15.1■□□□□ 0.01
AP003559.1-201ENST00000540906 RBM6P78332 1123 aaKnown RBP15.09■□□□□ 0.01
AP003559.1-201ENST00000540906 G3BP1Q13283 466 aaKnown RBP eCLIP15.09■□□□□ 0.01
AP003559.1-201ENST00000540906 CHMP3Q9Y3E7 222 aa15.09■□□□□ 0.01
AP003559.1-201ENST00000540906 BRWD3Q6RI45 1802 aa15.09■□□□□ 0.01
AP003559.1-201ENST00000540906 PCCAP05165 728 aaPredicted RBP15.08■□□□□ 0.01
AP003559.1-201ENST00000540906 ZNF594Q96JF6 807 aaPredicted RBP15.08■□□□□ 0.01
AP003559.1-201ENST00000540906 AOX1Q06278 1338 aa15.08■□□□□ 0
AP003559.1-201ENST00000540906 USP42Q9H9J4 1324 aaKnown RBP15.08■□□□□ 0
AP003559.1-201ENST00000540906 CAMTA2O94983 1202 aa15.08■□□□□ 0
AP003559.1-201ENST00000540906 AACSQ86V21 672 aa15.08■□□□□ 0
AP003559.1-201ENST00000540906 ERC1Q8IUD2 1116 aa15.08■□□□□ 0
AP003559.1-201ENST00000540906 CCDC85AQ96PX6 553 aaPredicted RBP15.08■□□□□ 0
AP003559.1-201ENST00000540906 CCDC8Q9H0W5 538 aaPredicted RBP15.08■□□□□ 0
AP003559.1-201ENST00000540906 UPF2Q9HAU5 1272 aaKnown RBP15.08■□□□□ 0
AP003559.1-201ENST00000540906 ERVV-1B6SEH8 477 aa15.07■□□□□ 0
AP003559.1-201ENST00000540906 TFCP2Q12800 502 aa15.07■□□□□ 0
AP003559.1-201ENST00000540906 ZNF34Q8IZ26 560 aa15.07■□□□□ 0
AP003559.1-201ENST00000540906 BCORQ6W2J9 1755 aa15.07■□□□□ 0
AP003559.1-201ENST00000540906 ATG9AQ7Z3C6 839 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 CLASRPQ8N2M8 674 aaKnown RBP15.06■□□□□ 0
AP003559.1-201ENST00000540906 ZBTB38Q8NAP3 1195 aaPredicted RBP15.06■□□□□ 0
AP003559.1-201ENST00000540906 RILPL2Q969X0 211 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 LY75O60449 1722 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 LRRC24Q50LG9 513 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 AMIGO3Q86WK7 504 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 DDRGK1Q96HY6 314 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 KIF2CQ99661 725 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 PUS3Q9BZE2 481 aaKnown RBP15.06■□□□□ 0
AP003559.1-201ENST00000540906 IL25Q9H293 177 aa15.06■□□□□ 0
AP003559.1-201ENST00000540906 AK9Q5TCS8 1911 aa15.05■□□□□ 0
AP003559.1-201ENST00000540906 TRIM6-TRIM34B2RNG4 842 aa15.05■□□□□ -0
AP003559.1-201ENST00000540906 RBM25P49756 843 aaKnown RBP15.05■□□□□ -0
AP003559.1-201ENST00000540906 TAF1LQ8IZX4 1826 aa15.04■□□□□ -0
AP003559.1-201ENST00000540906 IFIT2P09913 472 aaKnown RBP15.04■□□□□ -0
AP003559.1-201ENST00000540906 HSP90AB3PQ58FF7 597 aa15.04■□□□□ -0
AP003559.1-201ENST00000540906 SUSD4Q5VX71 490 aa15.04■□□□□ -0
AP003559.1-201ENST00000540906 PLA2G12BQ9BX93 195 aa15.04■□□□□ -0
AP003559.1-201ENST00000540906 CDHR2Q9BYE9 1310 aa15.04■□□□□ -0
AP003559.1-201ENST00000540906 CSF1RP07333 972 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 CHMLP26374 656 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 ECHDC1Q9NTX5 307 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 TTC41PQ6P2S7 1318 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 FAM177BA6PVY3 158 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 TNNI3KQ59H18 835 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 TRMT112Q9UI30 125 aaKnown RBP15.03■□□□□ -0
AP003559.1-201ENST00000540906 DBNLQ9UJU6 430 aaKnown RBP15.03■□□□□ -0
AP003559.1-201ENST00000540906 FPGT-TNNI3KV9GXZ4 949 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 CNTNAP4Q9C0A0 1308 aa15.03■□□□□ -0
AP003559.1-201ENST00000540906 MYH3P11055 1940 aa15.02■□□□□ -0
AP003559.1-201ENST00000540906 DDX60Q8IY21 1712 aaKnown RBP15.02■□□□□ -0
AP003559.1-201ENST00000540906 USP26Q9BXU7 913 aa15.02■□□□□ -0
AP003559.1-201ENST00000540906 CCNL1Q9UK58 526 aaPredicted RBP15.02■□□□□ -0
AP003559.1-201ENST00000540906 IRS4O14654 1257 aaPredicted RBP15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 TTLL11Q8NHH1 800 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 BCL2L12Q9HB09 334 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 SCN7AQ01118 1682 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 EYA2O00167 538 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 DBNDD2Q9BQY9 259 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 ESYT1Q9BSJ8 1104 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 TBC1D2Q9BYX2 928 aa15.01□□□□□ -0.01
AP003559.1-201ENST00000540906 GREM2Q9H772 168 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms