RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 NCOA4Q13772 614 aa7.83□□□□□ -1.16
PRKDC-209ENST00000540819 NAALADL2Q58DX5 795 aa7.83□□□□□ -1.16
PRKDC-209ENST00000540819 TMEM164Q5U3C3 297 aa7.83□□□□□ -1.16
PRKDC-209ENST00000540819 CD163Q86VB7 1156 aa7.83□□□□□ -1.16
PRKDC-209ENST00000540819 NFATC2IPQ8NCF5 419 aa7.83□□□□□ -1.16
PRKDC-209ENST00000540819 ZNF358Q9NW07 568 aa7.83□□□□□ -1.16
PRKDC-209ENST00000540819 ANKRD62A6NC57 917 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 SPDYE3A6NKU9 549 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 ATP9BO43861 1147 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 SSFA2P28290 1259 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 TXLNAP40222 546 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 TEAD4Q15561 434 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 LRRC69Q6ZNQ3 347 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 NPAS4Q8IUM7 802 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 PLVAPQ9BX97 442 aa7.82□□□□□ -1.16
PRKDC-209ENST00000540819 ELOA3CA0A087WX78 387 aaPredicted RBP7.81□□□□□ -1.16
PRKDC-209ENST00000540819 ELOA3DA6NLF2 546 aaPredicted RBP7.81□□□□□ -1.16
PRKDC-209ENST00000540819 ELOA3BQ3SY89 546 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 XP32Q5T750 250 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 TRIM50Q86XT4 487 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 ELOA3Q8NG57 546 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 PPP1R1BQ9UD71 204 aaPredicted RBP7.81□□□□□ -1.16
PRKDC-209ENST00000540819 HCN2Q9UL51 889 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 ZMIZ1Q9ULJ6 1067 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 CHMP3Q9Y3E7 222 aa7.81□□□□□ -1.16
PRKDC-209ENST00000540819 ANKRD33BA6NCL7 494 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 CHRNA4P43681 627 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 KANK4Q5T7N3 995 aaPredicted RBP7.8□□□□□ -1.16
PRKDC-209ENST00000540819 SYT9Q86SS6 491 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 SLC9A9Q8IVB4 645 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 TNS4Q8IZW8 715 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 DEPDC4Q8N2C3 294 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 STK32AQ8WU08 396 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 STRN4Q9NRL3 753 aa7.8□□□□□ -1.16
PRKDC-209ENST00000540819 SERTM1A2A2V5 107 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 EFSO43281 561 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 GATA4P43694 442 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 NEUROD1Q13562 356 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 PRRT3Q5FWE3 981 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 ZDHHC1Q8WTX9 485 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 HIRIP3Q9BW71 556 aaPredicted RBP7.79□□□□□ -1.16
PRKDC-209ENST00000540819 BCL11AQ9H165 835 aa7.79□□□□□ -1.16
PRKDC-209ENST00000540819 NOVA2Q9UNW9 492 aaKnown RBP7.79□□□□□ -1.16
PRKDC-209ENST00000540819 GPC6Q9Y625 555 aaPredicted RBP7.79□□□□□ -1.16
PRKDC-209ENST00000540819 ARID4BQ4LE39 1312 aaPredicted RBP7.78□□□□□ -1.16
PRKDC-209ENST00000540819 USP17L5A8MUK1 530 aa7.78□□□□□ -1.16
PRKDC-209ENST00000540819 SPATA31C1P0DKV0 1188 aa7.78□□□□□ -1.16
PRKDC-209ENST00000540819 ATP1A2P50993 1020 aa7.78□□□□□ -1.16
PRKDC-209ENST00000540819 DOC2BQ14184 412 aa7.78□□□□□ -1.16
PRKDC-209ENST00000540819 TBCELQ5QJ74 424 aa7.78□□□□□ -1.16
PRKDC-209ENST00000540819 RHPN1Q8TCX5 695 aa7.78□□□□□ -1.16
PRKDC-209ENST00000540819 EML1O00423 815 aa7.77□□□□□ -1.17
PRKDC-209ENST00000540819 SIN3BO75182 1162 aa7.77□□□□□ -1.17
PRKDC-209ENST00000540819 RECKO95980 971 aa7.77□□□□□ -1.17
PRKDC-209ENST00000540819 TRIM11Q96F44 468 aa7.77□□□□□ -1.17
PRKDC-209ENST00000540819 ANKIB1Q9P2G1 1089 aa7.77□□□□□ -1.17
PRKDC-209ENST00000540819 RBM19Q9Y4C8 960 aaKnown RBP7.77□□□□□ -1.17
PRKDC-209ENST00000540819 APBA3O96018 575 aa7.76□□□□□ -1.17
PRKDC-209ENST00000540819 SFSWAPQ12872 951 aaKnown RBP7.76□□□□□ -1.17
PRKDC-209ENST00000540819 CCDC102BQ68D86 513 aa7.76□□□□□ -1.17
PRKDC-209ENST00000540819 TPCN2Q8NHX9 752 aa7.76□□□□□ -1.17
PRKDC-209ENST00000540819 SEMA6BQ9H3T3 888 aa7.76□□□□□ -1.17
PRKDC-209ENST00000540819 BIN2Q9UBW5 565 aaPredicted RBP7.76□□□□□ -1.17
PRKDC-209ENST00000540819 EPHA4P54764 986 aa7.75□□□□□ -1.17
PRKDC-209ENST00000540819 GIMAP6Q6P9H5 292 aa7.75□□□□□ -1.17
PRKDC-209ENST00000540819 Q8N3U1 123 aa7.75□□□□□ -1.17
PRKDC-209ENST00000540819 CEP63Q96MT8 703 aa7.75□□□□□ -1.17
PRKDC-209ENST00000540819 HCN4Q9Y3Q4 1203 aa7.75□□□□□ -1.17
PRKDC-209ENST00000540819 ADARB2-AS1A8MUL3 147 aa7.74□□□□□ -1.17
PRKDC-209ENST00000540819 SERPINB4P48594 390 aa7.74□□□□□ -1.17
PRKDC-209ENST00000540819 PSMA6P60900 246 aaKnown RBP7.74□□□□□ -1.17
PRKDC-209ENST00000540819 TRIM28Q13263 835 aaKnown RBP7.74□□□□□ -1.17
PRKDC-209ENST00000540819 C1orf53Q5VUE5 145 aa7.74□□□□□ -1.17
PRKDC-209ENST00000540819 FBXO33Q7Z6M2 555 aa7.74□□□□□ -1.17
PRKDC-209ENST00000540819 CLP1Q92989 425 aaKnown RBP7.74□□□□□ -1.17
PRKDC-209ENST00000540819 FAM196BA6NMK8 535 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 SFI1A8K8P3 1242 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 M0R082 166 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 ZBTB7BO15156 539 aaPredicted RBP7.73□□□□□ -1.17
PRKDC-209ENST00000540819 ERCC5P28715 1186 aaPredicted RBP7.73□□□□□ -1.17
PRKDC-209ENST00000540819 SPEM2Q0P670 501 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 DPH6Q7L8W6 267 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 NOP9Q86U38 636 aaKnown RBP7.73□□□□□ -1.17
PRKDC-209ENST00000540819 CERS3Q8IU89 383 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 ZNF417Q8TAU3 575 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 ZNF587Q96SQ5 575 aaPredicted RBP7.73□□□□□ -1.17
PRKDC-209ENST00000540819 SLC30A3Q99726 388 aa7.73□□□□□ -1.17
PRKDC-209ENST00000540819 SH3PXD2AQ5TCZ1 1133 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 PLEKHM2Q8IWE5 1019 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 LARGE2Q8N3Y3 721 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 C7orf43Q8WVR3 580 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 TNFRSF25Q93038 417 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 TSPAN10Q9H1Z9 355 aaPredicted RBP7.72□□□□□ -1.17
PRKDC-209ENST00000540819 BRD7Q9NPI1 651 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 KCNH4Q9UQ05 1017 aa7.72□□□□□ -1.17
PRKDC-209ENST00000540819 USP17L3A6NCW0 530 aa7.71□□□□□ -1.18
PRKDC-209ENST00000540819 USP17L4A6NCW7 530 aa7.71□□□□□ -1.18
PRKDC-209ENST00000540819 USP17L2Q6R6M4 530 aa7.71□□□□□ -1.18
PRKDC-209ENST00000540819 USP17L1Q7RTZ2 530 aa7.71□□□□□ -1.18
PRKDC-209ENST00000540819 OGFOD1Q8N543 542 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms