RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 USPL1Q5W0Q7 1092 aa13.37□□□□□ -0.27
VPS33A-204ENST00000540669 RIC3Q7Z5B4 369 aa13.37□□□□□ -0.27
VPS33A-204ENST00000540669 NLRP10Q86W26 655 aa13.37□□□□□ -0.27
VPS33A-204ENST00000540669 CCDC191Q8NCU4 936 aa13.37□□□□□ -0.27
VPS33A-204ENST00000540669 USP44Q9H0E7 712 aa13.37□□□□□ -0.27
VPS33A-204ENST00000540669 DLEC1Q9Y238 1755 aa13.37□□□□□ -0.27
VPS33A-204ENST00000540669 CARMIL3Q8ND23 1372 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 ZBTB7BO15156 539 aaPredicted RBP13.36□□□□□ -0.27
VPS33A-204ENST00000540669 NTSR2O95665 410 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 GCKRQ14397 625 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 CWF19L2Q2TBE0 894 aaKnown RBP13.36□□□□□ -0.27
VPS33A-204ENST00000540669 FTSJ3Q8IY81 847 aaKnown RBP13.36□□□□□ -0.27
VPS33A-204ENST00000540669 MYD88Q99836 296 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 SRCIN1Q9C0H9 1055 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 ZBTB40Q9NUA8 1239 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 TFCP2L1Q9NZI6 479 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 DDX19BQ9UMR2 479 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 ZNF652Q9Y2D9 606 aa13.36□□□□□ -0.27
VPS33A-204ENST00000540669 PHF14O94880 888 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 TM4SF1P30408 202 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 FKBP8Q14318 412 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 PARP10Q53GL7 1025 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 CRBNQ96SW2 442 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 MEIS3Q99687 375 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 PPP1R1BQ9UD71 204 aaPredicted RBP13.35□□□□□ -0.27
VPS33A-204ENST00000540669 COG6Q9Y2V7 657 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 CDHR2Q9BYE9 1310 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 A0A1B0GUL6 1792 aa13.35□□□□□ -0.27
VPS33A-204ENST00000540669 ABCC12Q96J65 1359 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 H7C1W4 665 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 GRM8O00222 908 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 RFC4P35249 363 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 DDR1Q08345 913 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 AAMPQ13685 434 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 NFIXQ14938 502 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 TBC1D9BQ66K14 1250 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 SLC16A10Q8TF71 515 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 KAZALD1Q96I82 304 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 PDGFDQ9GZP0 370 aaPredicted RBP13.34□□□□□ -0.27
VPS33A-204ENST00000540669 ZNF330Q9Y3S2 320 aaPredicted RBP13.34□□□□□ -0.27
VPS33A-204ENST00000540669 COL4A1P02462 1669 aa13.34□□□□□ -0.27
VPS33A-204ENST00000540669 LRRC37AA6NMS7 1700 aa13.33□□□□□ -0.27
VPS33A-204ENST00000540669 C10orf71Q711Q0 1435 aa13.33□□□□□ -0.28
VPS33A-204ENST00000540669 PCCAP05165 728 aaPredicted RBP13.33□□□□□ -0.28
VPS33A-204ENST00000540669 NEXNQ0ZGT2 675 aa13.33□□□□□ -0.28
VPS33A-204ENST00000540669 MTX1Q13505 466 aa13.33□□□□□ -0.28
VPS33A-204ENST00000540669 ERICH6BQ5W0A0 696 aa13.33□□□□□ -0.28
VPS33A-204ENST00000540669 PLA2G12BQ9BX93 195 aa13.33□□□□□ -0.28
VPS33A-204ENST00000540669 SPON1Q9HCB6 807 aa13.33□□□□□ -0.28
VPS33A-204ENST00000540669 CWC25Q9NXE8 425 aaPredicted RBP13.33□□□□□ -0.28
VPS33A-204ENST00000540669 BRCA1P38398 1863 aaKnown RBP13.32□□□□□ -0.28
VPS33A-204ENST00000540669 ATP5J2-PTCD1G3V325 749 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 POLRMTO00411 1230 aaKnown RBP13.32□□□□□ -0.28
VPS33A-204ENST00000540669 ZPR1O75312 459 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 NBPF7P0C2Y1 421 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-204ENST00000540669 RABL6Q3YEC7 729 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-204ENST00000540669 SLC4A10Q6U841 1118 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 ITPRIPQ8IWB1 547 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 EXOC6Q8TAG9 804 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 SGIP1Q9BQI5 828 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 RTL9Q8NET4 1388 aa13.32□□□□□ -0.28
VPS33A-204ENST00000540669 SUSD4Q5VX71 490 aa13.31□□□□□ -0.28
VPS33A-204ENST00000540669 NPM2Q86SE8 214 aaKnown RBP13.31□□□□□ -0.28
VPS33A-204ENST00000540669 NLGN1Q8N2Q7 840 aa13.31□□□□□ -0.28
VPS33A-204ENST00000540669 ZBTB38Q8NAP3 1195 aaPredicted RBP13.31□□□□□ -0.28
VPS33A-204ENST00000540669 NIP7Q9Y221 180 aaKnown RBP eCLIP13.31□□□□□ -0.28
VPS33A-204ENST00000540669 GNAI3P08754 354 aa13.3□□□□□ -0.28
VPS33A-204ENST00000540669 GPTP24298 496 aa13.3□□□□□ -0.28
VPS33A-204ENST00000540669 POLD1P28340 1107 aa13.3□□□□□ -0.28
VPS33A-204ENST00000540669 ANKRD44Q8N8A2 993 aa13.3□□□□□ -0.28
VPS33A-204ENST00000540669 MTFR1LQ9H019 292 aa13.3□□□□□ -0.28
VPS33A-204ENST00000540669 CAPN15O75808 1086 aa13.29□□□□□ -0.28
VPS33A-204ENST00000540669 IRX6P78412 446 aaPredicted RBP13.29□□□□□ -0.28
VPS33A-204ENST00000540669 SLC10A5Q5PT55 438 aa13.29□□□□□ -0.28
VPS33A-204ENST00000540669 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
VPS33A-204ENST00000540669 LTBP1Q14766 1721 aa13.29□□□□□ -0.28
VPS33A-204ENST00000540669 KLRG2A4D1S0 409 aaPredicted RBP13.28□□□□□ -0.28
VPS33A-204ENST00000540669 FOXO4P98177 505 aa13.28□□□□□ -0.28
VPS33A-204ENST00000540669 EPHA10Q5JZY3 1008 aa13.28□□□□□ -0.28
VPS33A-204ENST00000540669 PRR5LQ6MZQ0 368 aa13.28□□□□□ -0.28
VPS33A-204ENST00000540669 UBE3BQ7Z3V4 1068 aa13.28□□□□□ -0.28
VPS33A-204ENST00000540669 SUCLG2Q96I99 432 aa13.28□□□□□ -0.28
VPS33A-204ENST00000540669 SH3TC1Q8TE82 1336 aa13.28□□□□□ -0.28
VPS33A-204ENST00000540669 UBTFL1P0CB47 393 aaPredicted RBP13.27□□□□□ -0.29
VPS33A-204ENST00000540669 CEP85Q6P2H3 762 aa13.27□□□□□ -0.29
VPS33A-204ENST00000540669 SIRT2Q8IXJ6 389 aa13.27□□□□□ -0.29
VPS33A-204ENST00000540669 SYNE4Q8N205 404 aa13.27□□□□□ -0.29
VPS33A-204ENST00000540669 SETDB2Q96T68 719 aa13.27□□□□□ -0.29
VPS33A-204ENST00000540669 UTP14AQ9BVJ6 771 aaKnown RBP13.27□□□□□ -0.29
VPS33A-204ENST00000540669 CHMP4BQ9H444 224 aaKnown RBP13.27□□□□□ -0.29
VPS33A-204ENST00000540669 PCDHB15Q9Y5E8 787 aa13.27□□□□□ -0.29
VPS33A-204ENST00000540669 ZBTB7AO95365 584 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 GNAI2P04899 355 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 CSF1RP07333 972 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 MMP10P09238 476 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 PTGER2P43116 358 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 CRY2Q49AN0 593 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 PPP1R42Q7Z4L9 355 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 FAM89AQ96GI7 184 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 SPEF2Q9C093 1822 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms