RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 NEUROD6Q96NK8 337 aa11.91□□□□□ -0.5
TRAF1-202ENST00000540010 PA2G4Q9UQ80 394 aaKnown RBP11.91□□□□□ -0.5
TRAF1-202ENST00000540010 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.91□□□□□ -0.5
TRAF1-202ENST00000540010 APPP05067 770 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 UBE3BQ7Z3V4 1068 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 CCDC34Q96HJ3 373 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 SDF4Q9BRK5 362 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 METTL22Q9BUU2 404 aaPredicted RBP11.9□□□□□ -0.5
TRAF1-202ENST00000540010 LMO7Q8WWI1 1683 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 A0A087WZG4 1122 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 EXOC5O00471 708 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 KDM4AO75164 1064 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 RBM25P49756 843 aaKnown RBP11.9□□□□□ -0.5
TRAF1-202ENST00000540010 SUCLG2Q96I99 432 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 PKNOX2Q96KN3 472 aa11.9□□□□□ -0.5
TRAF1-202ENST00000540010 BICC1Q9H694 974 aaKnown RBP11.9□□□□□ -0.5
TRAF1-202ENST00000540010 CWC22Q9HCG8 908 aaKnown RBP11.9□□□□□ -0.5
TRAF1-202ENST00000540010 CNTROBQ8N137 903 aa11.9□□□□□ -0.51
TRAF1-202ENST00000540010 ZBTB3Q9H5J0 574 aa11.9□□□□□ -0.51
TRAF1-202ENST00000540010 MCM2P49736 904 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 ZSCAN30Q86W11 494 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 FSD1Q9BTV5 496 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 CCDC73Q6ZRK6 1079 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 AACSQ86V21 672 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 FAM208AQ9UK61 1670 aaKnown RBP11.89□□□□□ -0.51
TRAF1-202ENST00000540010 UQCRHLA0A096LP55 91 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 A1BGP04217 495 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 UQCRHP07919 91 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 XRCC6P12956 609 aaKnown RBP eCLIP11.89□□□□□ -0.51
TRAF1-202ENST00000540010 STK3Q13188 491 aa11.89□□□□□ -0.51
TRAF1-202ENST00000540010 CAMTA1Q9Y6Y1 1673 aa11.88□□□□□ -0.51
TRAF1-202ENST00000540010 NEURL1BA8MQ27 555 aa11.88□□□□□ -0.51
TRAF1-202ENST00000540010 PDIA6Q15084 440 aa11.88□□□□□ -0.51
TRAF1-202ENST00000540010 COL5A2P05997 1499 aaPredicted RBP11.88□□□□□ -0.51
TRAF1-202ENST00000540010 GCKRQ14397 625 aa11.88□□□□□ -0.51
TRAF1-202ENST00000540010 POLA2Q14181 598 aa11.88□□□□□ -0.51
TRAF1-202ENST00000540010 STRCQ7RTU9 1775 aa11.88□□□□□ -0.51
TRAF1-202ENST00000540010 OSBPL3Q9H4L5 887 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 GDPD2Q9HCC8 539 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 HEG1Q9ULI3 1381 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 MAP7D2Q96T17 732 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 KAT6BQ8WYB5 2073 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 IGKV5-2P06315 115 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 TPM3P06753 285 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 TPD52L1Q16890 204 aaPredicted RBP11.87□□□□□ -0.51
TRAF1-202ENST00000540010 CWC27Q6UX04 472 aaKnown RBP11.87□□□□□ -0.51
TRAF1-202ENST00000540010 KIF6Q6ZMV9 814 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 PLBD2Q8NHP8 589 aa11.87□□□□□ -0.51
TRAF1-202ENST00000540010 LARP6Q9BRS8 491 aaKnown RBP11.87□□□□□ -0.51
TRAF1-202ENST00000540010 STARD3NLO95772 234 aa11.86□□□□□ -0.51
TRAF1-202ENST00000540010 FERMT3Q86UX7 667 aa11.86□□□□□ -0.51
TRAF1-202ENST00000540010 CPLX2Q6PUV4 134 aaKnown RBP11.86□□□□□ -0.51
TRAF1-202ENST00000540010 VIRMAQ69YN4 1812 aaKnown RBP11.86□□□□□ -0.51
TRAF1-202ENST00000540010 RRP9O43818 475 aaKnown RBP11.86□□□□□ -0.51
TRAF1-202ENST00000540010 GLRX3O76003 335 aaKnown RBP11.86□□□□□ -0.51
TRAF1-202ENST00000540010 CCDC8Q9H0W5 538 aaPredicted RBP11.86□□□□□ -0.51
TRAF1-202ENST00000540010 GOLGA6L1Q8N7Z2 621 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 KLHDC4Q8TBB5 520 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 USP26Q9BXU7 913 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 WDR33Q9C0J8 1336 aaKnown RBP11.85□□□□□ -0.51
TRAF1-202ENST00000540010 TOM1O60784 492 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 TTLL7Q6ZT98 887 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 CWC25Q9NXE8 425 aaPredicted RBP11.85□□□□□ -0.51
TRAF1-202ENST00000540010 CACNA1FO60840 1977 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 KDM3BQ7LBC6 1761 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 DNAJC2Q99543 621 aaKnown RBP11.85□□□□□ -0.51
TRAF1-202ENST00000540010 ECHDC1Q9NTX5 307 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 ASAP1Q9ULH1 1129 aa11.85□□□□□ -0.51
TRAF1-202ENST00000540010 HMGN5P82970 282 aaKnown RBP11.84□□□□□ -0.51
TRAF1-202ENST00000540010 LARP1BQ659C4 914 aaKnown RBP11.84□□□□□ -0.51
TRAF1-202ENST00000540010 SYNE3Q6ZMZ3 975 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 ESYT1Q9BSJ8 1104 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 TEX13AQ9BXU3 409 aaPredicted RBP11.84□□□□□ -0.51
TRAF1-202ENST00000540010 STAP2Q9UGK3 403 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 WASHC4Q2M389 1173 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 CHMLP26374 656 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 DNAJC10Q8IXB1 793 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 ABCC6O95255 1503 aa11.84□□□□□ -0.51
TRAF1-202ENST00000540010 ERBB4Q15303 1308 aa11.83□□□□□ -0.51
TRAF1-202ENST00000540010 MTERF4Q7Z6M4 381 aaKnown RBP11.83□□□□□ -0.52
TRAF1-202ENST00000540010 ATP2B1P20020 1258 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 PDE4CQ08493 712 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 TRDNQ13061 729 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 MTX1Q13505 466 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 LMBR1LQ6UX01 489 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 SNX21Q969T3 373 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 CYP46A1Q9Y6A2 500 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 AOX1Q06278 1338 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 PLEKHG2Q9H7P9 1386 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 PSMA5P28066 241 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 NKX1-1Q15270 411 aaPredicted RBP11.83□□□□□ -0.52
TRAF1-202ENST00000540010 DDB1Q16531 1140 aa11.83□□□□□ -0.52
TRAF1-202ENST00000540010 RBM27Q9P2N5 1060 aaKnown RBP11.83□□□□□ -0.52
TRAF1-202ENST00000540010 NBPF26B4DH59 902 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 CLSTN1O94985 981 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 BAG4O95429 457 aaKnown RBP11.82□□□□□ -0.52
TRAF1-202ENST00000540010 PDCP20941 246 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 TRIM29Q14134 588 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 NBPF14Q5TI25 921 aa11.82□□□□□ -0.52
TRAF1-202ENST00000540010 NBPF10Q6P3W6 841 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms