RNA–Protein interactions for RNA: ENST00000539463.1

DENR-204, Transcript of density regulated re-initiation and release factor, human

TSL 2

Gene DENR, Length 671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DENR-204	ENST00000539463	TSPYL6	Q8N831	410 aa		33.41	■■■□□ 2.94
DENR-204	ENST00000539463	ALDH1B1	P30837	517 aa		33.4	■■■□□ 2.94
DENR-204	ENST00000539463	SOGA3	Q5TF21	947 aa		33.4	■■■□□ 2.94
DENR-204	ENST00000539463	SALL2	Q9Y467	1007 aa	Predicted RBP	33.4	■■■□□ 2.94
DENR-204	ENST00000539463	ARFGEF2	Q9Y6D5	1785 aa		33.39	■■■□□ 2.94
DENR-204	ENST00000539463	SLC10A5	Q5PT55	438 aa		33.38	■■■□□ 2.93
DENR-204	ENST00000539463	KIF3C	O14782	793 aa		33.37	■■■□□ 2.93
DENR-204	ENST00000539463	RNF123	Q5XPI4	1314 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	LTBP3	Q9NS15	1303 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	CACNA1S	Q13698	1873 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	HOXA10	P31260	410 aa	Predicted RBP	33.36	■■■□□ 2.93
DENR-204	ENST00000539463	CCDC30	Q5VVM6	783 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	C3orf67	Q6ZVT6	689 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	RPGR	Q92834	1020 aa	Known RBP	33.36	■■■□□ 2.93
DENR-204	ENST00000539463	CHMP4A	Q9BY43	222 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	TAOK3	Q9H2K8	898 aa		33.36	■■■□□ 2.93
DENR-204	ENST00000539463	PHAX	Q9H814	394 aa	Known RBP	33.36	■■■□□ 2.93
DENR-204	ENST00000539463	ZC3H4	Q9UPT8	1303 aa	Known RBP	33.35	■■■□□ 2.93
DENR-204	ENST00000539463	ANKRD36C	Q5JPF3	1778 aa		33.35	■■■□□ 2.93
DENR-204	ENST00000539463	WDR63	Q8IWG1	891 aa		33.35	■■■□□ 2.93
DENR-204	ENST00000539463	FER1L6	Q2WGJ9	1857 aa		33.35	■■■□□ 2.93
DENR-204	ENST00000539463	CCDC93	Q567U6	631 aa		33.34	■■■□□ 2.93
DENR-204	ENST00000539463	SYNE4	Q8N205	404 aa		33.34	■■■□□ 2.93
DENR-204	ENST00000539463	NLRP3	Q96P20	1036 aa		33.34	■■■□□ 2.93
DENR-204	ENST00000539463	ISCA1	Q9BUE6	129 aa		33.34	■■■□□ 2.93
DENR-204	ENST00000539463	NMRK2	Q9NPI5	230 aa		33.34	■■■□□ 2.93
DENR-204	ENST00000539463	OLFM4	Q6UX06	510 aa		33.33	■■■□□ 2.93
DENR-204	ENST00000539463	TRMT112	Q9UI30	125 aa	Known RBP	33.33	■■■□□ 2.93
DENR-204	ENST00000539463	KDM2B	Q8NHM5	1336 aa		33.31	■■■□□ 2.92
DENR-204	ENST00000539463	ATP5J2-PTCD1	G3V325	749 aa		33.31	■■■□□ 2.92
DENR-204	ENST00000539463	RBM17	Q96I25	401 aa	Known RBP	33.31	■■■□□ 2.92
DENR-204	ENST00000539463	CRAMP1	Q96RY5	1269 aa		33.31	■■■□□ 2.92
DENR-204	ENST00000539463	GOLGA2	Q08379	1002 aa		33.3	■■■□□ 2.92
DENR-204	ENST00000539463	TWISTNB	Q3B726	338 aa	Predicted RBP	33.3	■■■□□ 2.92
DENR-204	ENST00000539463	RIC3	Q7Z5B4	369 aa		33.3	■■■□□ 2.92
DENR-204	ENST00000539463	ZNF428	Q96B54	188 aa		33.3	■■■□□ 2.92
DENR-204	ENST00000539463	SH3TC1	Q8TE82	1336 aa		33.29	■■■□□ 2.92
DENR-204	ENST00000539463	HCLS1	P14317	486 aa	Predicted RBP	33.29	■■■□□ 2.92
DENR-204	ENST00000539463	FANCI	Q9NVI1	1328 aa		33.28	■■■□□ 2.92
DENR-204	ENST00000539463	TRIM28	Q13263	835 aa	Known RBP	33.28	■■■□□ 2.92
DENR-204	ENST00000539463	RTKN2	Q8IZC4	609 aa		33.28	■■■□□ 2.92
DENR-204	ENST00000539463	CCDC88A	Q3V6T2	1871 aa		33.27	■■■□□ 2.92
DENR-204	ENST00000539463	GLTPD2	A6NH11	291 aa		33.26	■■■□□ 2.91
DENR-204	ENST00000539463	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.26	■■■□□ 2.91
DENR-204	ENST00000539463	TCERG1	O14776	1098 aa	Known RBP	33.25	■■■□□ 2.91
DENR-204	ENST00000539463	FAM89A	Q96GI7	184 aa		33.24	■■■□□ 2.91
DENR-204	ENST00000539463	STK31	Q9BXU1	1019 aa		33.24	■■■□□ 2.91
DENR-204	ENST00000539463	RRAGC	Q9HB90	399 aa		33.24	■■■□□ 2.91
DENR-204	ENST00000539463	CC2D2B	Q6DHV5	1058 aa		33.23	■■■□□ 2.91
DENR-204	ENST00000539463	SPINK5	Q9NQ38	1064 aa	Predicted RBP	33.23	■■■□□ 2.91
DENR-204	ENST00000539463	TIAM2	Q8IVF5	1701 aa		33.22	■■■□□ 2.91
DENR-204	ENST00000539463	PPEF1	O14829	653 aa	Predicted RBP	33.22	■■■□□ 2.91
DENR-204	ENST00000539463	DDX58	O95786	925 aa	Known RBP	33.22	■■■□□ 2.91
DENR-204	ENST00000539463	ZNF277	Q9NRM2	450 aa	Predicted RBP	33.22	■■■□□ 2.91
DENR-204	ENST00000539463	SNED1	Q8TER0	1413 aa		33.21	■■■□□ 2.91
DENR-204	ENST00000539463	TOMM70	O94826	608 aa		33.21	■■■□□ 2.91
DENR-204	ENST00000539463	MYD88	Q99836	296 aa		33.21	■■■□□ 2.91
DENR-204	ENST00000539463	EXOSC9	Q06265	439 aa	Known RBP	33.2	■■■□□ 2.91
DENR-204	ENST00000539463	ABCC4	O15439	1325 aa		33.2	■■■□□ 2.91
DENR-204	ENST00000539463	SLC4A2	P04920	1241 aa		33.19	■■■□□ 2.9
DENR-204	ENST00000539463	DPY19L2	Q6NUT2	758 aa		33.19	■■■□□ 2.9
DENR-204	ENST00000539463	SLC51A	Q86UW1	340 aa		33.19	■■■□□ 2.9
DENR-204	ENST00000539463	PSMD1	Q99460	953 aa		33.19	■■■□□ 2.9
DENR-204	ENST00000539463	METTL22	Q9BUU2	404 aa	Predicted RBP	33.19	■■■□□ 2.9
DENR-204	ENST00000539463	DICER1	Q9UPY3	1922 aa	Known RBP	33.19	■■■□□ 2.9
DENR-204	ENST00000539463	MAP3K2	Q9Y2U5	619 aa		33.18	■■■□□ 2.9
DENR-204	ENST00000539463	VAMP4	O75379	141 aa		33.17	■■■□□ 2.9
DENR-204	ENST00000539463	GRIPAP1	Q4V328	841 aa		33.17	■■■□□ 2.9
DENR-204	ENST00000539463	RTL5	Q5HYW3	569 aa	Predicted RBP	33.17	■■■□□ 2.9
DENR-204	ENST00000539463	KSR2	Q6VAB6	950 aa		33.17	■■■□□ 2.9
DENR-204	ENST00000539463	G2E3	Q7L622	706 aa		33.17	■■■□□ 2.9
DENR-204	ENST00000539463	PI4KAP2	A4QPH2	592 aa		33.16	■■■□□ 2.9
DENR-204	ENST00000539463	DDX46	Q7L014	1031 aa	Known RBP	33.16	■■■□□ 2.9
DENR-204	ENST00000539463	PI4KAP1	Q8N8J0	262 aa		33.16	■■■□□ 2.9
DENR-204	ENST00000539463	CCDC191	Q8NCU4	936 aa		33.16	■■■□□ 2.9
DENR-204	ENST00000539463	MYH16	Q9H6N6	1097 aa		33.16	■■■□□ 2.9
DENR-204	ENST00000539463	ATP6V0A2	Q9Y487	856 aa		33.16	■■■□□ 2.9
DENR-204	ENST00000539463	LAMB2	P55268	1798 aa		33.16	■■■□□ 2.9
DENR-204	ENST00000539463	IRS4	O14654	1257 aa	Predicted RBP	33.15	■■■□□ 2.9
DENR-204	ENST00000539463	BBOX1	O75936	387 aa		33.15	■■■□□ 2.9
DENR-204	ENST00000539463	C16orf71	Q8IYS4	520 aa	Predicted RBP	33.15	■■■□□ 2.9
DENR-204	ENST00000539463	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	33.15	■■■□□ 2.9
DENR-204	ENST00000539463	ZNF521	Q96K83	1311 aa		33.15	■■■□□ 2.9
DENR-204	ENST00000539463	VEGFA	P15692	232 aa	Predicted RBP	33.14	■■■□□ 2.9
DENR-204	ENST00000539463	IARS	P41252	1262 aa	Known RBP	33.14	■■■□□ 2.9
DENR-204	ENST00000539463	SF3B3	Q15393	1217 aa	Known RBP	33.13	■■■□□ 2.89
DENR-204	ENST00000539463	CWC25	Q9NXE8	425 aa	Predicted RBP	33.13	■■■□□ 2.89
DENR-204	ENST00000539463	DDX60	Q8IY21	1712 aa	Known RBP	33.13	■■■□□ 2.89
DENR-204	ENST00000539463	GRAP	Q13588	217 aa		33.12	■■■□□ 2.89
DENR-204	ENST00000539463	RBM46	Q8TBY0	533 aa	Known RBP	33.12	■■■□□ 2.89
DENR-204	ENST00000539463	GRAPL	Q8TC17	118 aa	Predicted RBP	33.12	■■■□□ 2.89
DENR-204	ENST00000539463	TMX4	Q9H1E5	349 aa	Predicted RBP	33.12	■■■□□ 2.89
DENR-204	ENST00000539463	POTEC	B2RU33	542 aa		33.11	■■■□□ 2.89
DENR-204	ENST00000539463	CCER2	I3L3R5	266 aa		33.1	■■■□□ 2.89
DENR-204	ENST00000539463	DDN	O94850	711 aa	Predicted RBP	33.1	■■■□□ 2.89
DENR-204	ENST00000539463	PCCA	P05165	728 aa	Predicted RBP	33.1	■■■□□ 2.89
DENR-204	ENST00000539463	IGKV5-2	P06315	115 aa		33.1	■■■□□ 2.89
DENR-204	ENST00000539463	SP8	Q8IXZ3	490 aa		33.1	■■■□□ 2.89
DENR-204	ENST00000539463	FLII	Q13045	1269 aa		33.09	■■■□□ 2.89
DENR-204	ENST00000539463	HSPA6	P17066	643 aa		33.08	■■■□□ 2.89

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