RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 C3orf67Q6ZVT6 689 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 C2CD5Q86YS7 1000 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 ZNF219Q9P2Y4 722 aaPredicted RBP9.46□□□□□ -0.9
LMO3-220ENST00000539232 TSKSQ9UJT2 592 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 SCN4AP35499 1836 aa9.46□□□□□ -0.9
LMO3-220ENST00000539232 TCERG1O14776 1098 aaKnown RBP9.45□□□□□ -0.9
LMO3-220ENST00000539232 DUSP27Q5VZP5 1158 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 OLFM4Q6UX06 510 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 WWC1Q8IX03 1113 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 FAM9BQ8IZU0 186 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 SYNE4Q8N205 404 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 XAGE3Q8WTP9 111 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 CAPNS2Q96L46 248 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 GPR101Q96P66 508 aaPredicted RBP9.45□□□□□ -0.9
LMO3-220ENST00000539232 SETDB2Q96T68 719 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 CHPF2Q9P2E5 772 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 ABT1Q9ULW3 272 aaKnown RBP9.45□□□□□ -0.9
LMO3-220ENST00000539232 NIP7Q9Y221 180 aaKnown RBP eCLIP9.45□□□□□ -0.9
LMO3-220ENST00000539232 UBN2Q6ZU65 1347 aa9.45□□□□□ -0.9
LMO3-220ENST00000539232 AIMP1Q12904 312 aaKnown RBP9.44□□□□□ -0.9
LMO3-220ENST00000539232 COPS6Q7L5N1 327 aa9.44□□□□□ -0.9
LMO3-220ENST00000539232 NUTM1Q86Y26 1132 aa9.44□□□□□ -0.9
LMO3-220ENST00000539232 BABAM1Q9NWV8 329 aa9.44□□□□□ -0.9
LMO3-220ENST00000539232 MAP3K15Q6ZN16 1313 aa9.44□□□□□ -0.9
LMO3-220ENST00000539232 ABCC12Q96J65 1359 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 NFKBIEO00221 500 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 MAP2K2P36507 400 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 ERFEQ4G0M1 354 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 SUSD4Q5VX71 490 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 NBPF5PQ86XG9 351 aaPredicted RBP9.43□□□□□ -0.9
LMO3-220ENST00000539232 ZNF34Q8IZ26 560 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 CNBD1Q8NA66 436 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 BRIP1Q9BX63 1249 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 TAF1DQ9H5J8 278 aaPredicted RBP9.43□□□□□ -0.9
LMO3-220ENST00000539232 IFT57Q9NWB7 429 aa9.43□□□□□ -0.9
LMO3-220ENST00000539232 ERVV-1B6SEH8 477 aa9.42□□□□□ -0.9
LMO3-220ENST00000539232 DDNO94850 711 aaPredicted RBP9.42□□□□□ -0.9
LMO3-220ENST00000539232 HDGFL1Q5TGJ6 251 aa9.42□□□□□ -0.9
LMO3-220ENST00000539232 CLEC4GQ6UXB4 293 aa9.42□□□□□ -0.9
LMO3-220ENST00000539232 PHAXQ9H814 394 aaKnown RBP9.42□□□□□ -0.9
LMO3-220ENST00000539232 DLEC1Q9Y238 1755 aa9.42□□□□□ -0.9
LMO3-220ENST00000539232 KLRG2A4D1S0 409 aaPredicted RBP9.41□□□□□ -0.9
LMO3-220ENST00000539232 PAXIP1Q6ZW49 1069 aaPredicted RBP9.41□□□□□ -0.9
LMO3-220ENST00000539232 NPM2Q86SE8 214 aaKnown RBP9.41□□□□□ -0.9
LMO3-220ENST00000539232 TTLL6Q8N841 843 aa9.41□□□□□ -0.9
LMO3-220ENST00000539232 ZNF622Q969S3 477 aaKnown RBP eCLIP9.41□□□□□ -0.9
LMO3-220ENST00000539232 L3MBTL3Q96JM7 780 aaPredicted RBP9.41□□□□□ -0.9
LMO3-220ENST00000539232 DDX21Q9NR30 783 aaKnown RBP eCLIP9.41□□□□□ -0.9
LMO3-220ENST00000539232 ADAMTSL1Q8N6G6 1762 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 ERBB4Q15303 1308 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 ATP5J2-PTCD1G3V325 749 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 H0YIN7 160 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 C21orf2O43822 256 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 NTSR2O95665 410 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 SRGNP10124 158 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 FXR1P51114 621 aaKnown RBP eCLIP9.4□□□□□ -0.9
LMO3-220ENST00000539232 GNAI1P63096 354 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 CYP4F22Q6NT55 531 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 GIGYF2Q6Y7W6 1299 aaKnown RBP9.4□□□□□ -0.9
LMO3-220ENST00000539232 KIF6Q6ZMV9 814 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 G2E3Q7L622 706 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 CNTROBQ8N137 903 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 C7orf43Q8WVR3 580 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 CLEC11AQ9Y240 323 aa9.4□□□□□ -0.9
LMO3-220ENST00000539232 FER1L6Q2WGJ9 1857 aa9.39□□□□□ -0.91
LMO3-220ENST00000539232 HCLS1P14317 486 aaPredicted RBP9.39□□□□□ -0.91
LMO3-220ENST00000539232 GRM1Q13255 1194 aa9.39□□□□□ -0.91
LMO3-220ENST00000539232 CCDC27Q2M243 656 aa9.39□□□□□ -0.91
LMO3-220ENST00000539232 EAPPQ56P03 285 aaPredicted RBP9.39□□□□□ -0.91
LMO3-220ENST00000539232 PRPF40BQ6NWY9 871 aaKnown RBP9.39□□□□□ -0.91
LMO3-220ENST00000539232 NLRP10Q86W26 655 aa9.39□□□□□ -0.91
LMO3-220ENST00000539232 JARID2Q92833 1246 aaPredicted RBP9.39□□□□□ -0.91
LMO3-220ENST00000539232 ZNF652Q9Y2D9 606 aa9.39□□□□□ -0.91
LMO3-220ENST00000539232 KDM3BQ7LBC6 1761 aa9.39□□□□□ -0.91
LMO3-220ENST00000539232 FANCIQ9NVI1 1328 aa9.38□□□□□ -0.91
LMO3-220ENST00000539232 PDE6BP35913 854 aa9.38□□□□□ -0.91
LMO3-220ENST00000539232 BRPF1P55201 1214 aaPredicted RBP9.38□□□□□ -0.91
LMO3-220ENST00000539232 ST5P78524 1137 aa9.38□□□□□ -0.91
LMO3-220ENST00000539232 TCIRG1Q13488 830 aa9.38□□□□□ -0.91
LMO3-220ENST00000539232 TPTE2Q6XPS3 522 aa9.38□□□□□ -0.91
LMO3-220ENST00000539232 PNMA8AQ86V59 439 aaPredicted RBP9.38□□□□□ -0.91
LMO3-220ENST00000539232 ZNF521Q96K83 1311 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 LTBP3Q9NS15 1303 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 TRPM7Q96QT4 1865 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 RGL2O15211 777 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 NPHP1O15259 732 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 HOXB7P09629 217 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 EXOSC9Q06265 439 aaKnown RBP9.37□□□□□ -0.91
LMO3-220ENST00000539232 CRY2Q49AN0 593 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 RTL5Q5HYW3 569 aaPredicted RBP9.37□□□□□ -0.91
LMO3-220ENST00000539232 MAP1SQ66K74 1059 aaPredicted RBP9.37□□□□□ -0.91
LMO3-220ENST00000539232 STYK1Q6J9G0 422 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 MIER1Q8N108 512 aa9.37□□□□□ -0.91
LMO3-220ENST00000539232 DBF4Q9UBU7 674 aaPredicted RBP9.37□□□□□ -0.91
LMO3-220ENST00000539232 SCN7AQ01118 1682 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 AOC2O75106 756 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 NPR1P16066 1061 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 DIEXFQ68CQ4 756 aaKnown RBP9.36□□□□□ -0.91
LMO3-220ENST00000539232 ANKRD13DQ6ZTN6 518 aa9.36□□□□□ -0.91
LMO3-220ENST00000539232 SLC17A8Q8NDX2 589 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms