RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, human

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC78-215	ENST00000538176	ARFGEF2	Q9Y6D5	1785 aa		27.78	■■■□□ 2.04
CCDC78-215	ENST00000538176	SLX4	Q8IY92	1834 aa		27.77	■■■□□ 2.04
CCDC78-215	ENST00000538176	HOXA10	P31260	410 aa	Predicted RBP	27.77	■■■□□ 2.04
CCDC78-215	ENST00000538176	GRIPAP1	Q4V328	841 aa		27.77	■■■□□ 2.04
CCDC78-215	ENST00000538176	CC2D2B	Q6DHV5	1058 aa		27.77	■■■□□ 2.04
CCDC78-215	ENST00000538176	RTKN2	Q8IZC4	609 aa		27.77	■■■□□ 2.04
CCDC78-215	ENST00000538176	RPGR	Q92834	1020 aa	Known RBP	27.77	■■■□□ 2.04
CCDC78-215	ENST00000538176	TOMM70	O94826	608 aa		27.76	■■■□□ 2.03
CCDC78-215	ENST00000538176	DPY19L2	Q6NUT2	758 aa		27.76	■■■□□ 2.03
CCDC78-215	ENST00000538176	WWC1	Q8IX03	1113 aa		27.76	■■■□□ 2.03
CCDC78-215	ENST00000538176	IL16	Q14005	1332 aa		27.75	■■■□□ 2.03
CCDC78-215	ENST00000538176	FER1L6	Q2WGJ9	1857 aa		27.75	■■■□□ 2.03
CCDC78-215	ENST00000538176	GLTPD2	A6NH11	291 aa		27.75	■■■□□ 2.03
CCDC78-215	ENST00000538176	RBM17	Q96I25	401 aa	Known RBP	27.75	■■■□□ 2.03
CCDC78-215	ENST00000538176	SENP3-EIF4A1	A0A087X0R7	540 aa		27.74	■■■□□ 2.03
CCDC78-215	ENST00000538176	NLRP10	Q86W26	655 aa		27.74	■■■□□ 2.03
CCDC78-215	ENST00000538176	CRAMP1	Q96RY5	1269 aa		27.74	■■■□□ 2.03
CCDC78-215	ENST00000538176	ABCC12	Q96J65	1359 aa		27.73	■■■□□ 2.03
CCDC78-215	ENST00000538176	CCDC30	Q5VVM6	783 aa		27.73	■■■□□ 2.03
CCDC78-215	ENST00000538176	C16orf71	Q8IYS4	520 aa	Predicted RBP	27.73	■■■□□ 2.03
CCDC78-215	ENST00000538176	PRELP	P51888	382 aa		27.72	■■■□□ 2.03
CCDC78-215	ENST00000538176	NMRK2	Q9NPI5	230 aa		27.72	■■■□□ 2.03
CCDC78-215	ENST00000538176	ELL2	O00472	640 aa	Predicted RBP	27.71	■■■□□ 2.03
CCDC78-215	ENST00000538176	CCDC88A	Q3V6T2	1871 aa		27.71	■■■□□ 2.03
CCDC78-215	ENST00000538176	TRMT112	Q9UI30	125 aa	Known RBP	27.71	■■■□□ 2.03
CCDC78-215	ENST00000538176	SH3TC1	Q8TE82	1336 aa		27.7	■■■□□ 2.03
CCDC78-215	ENST00000538176	FKBP4	Q02790	459 aa	Known RBP eCLIP	27.7	■■■□□ 2.02
CCDC78-215	ENST00000538176	C8orf58	Q8NAV2	365 aa		27.7	■■■□□ 2.02
CCDC78-215	ENST00000538176	TMX4	Q9H1E5	349 aa	Predicted RBP	27.7	■■■□□ 2.02
CCDC78-215	ENST00000538176	GOLGA2	Q08379	1002 aa		27.69	■■■□□ 2.02
CCDC78-215	ENST00000538176	TRIM28	Q13263	835 aa	Known RBP	27.69	■■■□□ 2.02
CCDC78-215	ENST00000538176	WDR63	Q8IWG1	891 aa		27.69	■■■□□ 2.02
CCDC78-215	ENST00000538176	CACNA1S	Q13698	1873 aa		27.69	■■■□□ 2.02
CCDC78-215	ENST00000538176	ANKRD36C	Q5JPF3	1778 aa		27.68	■■■□□ 2.02
CCDC78-215	ENST00000538176	RIC3	Q7Z5B4	369 aa		27.68	■■■□□ 2.02
CCDC78-215	ENST00000538176	RBM46	Q8TBY0	533 aa	Known RBP	27.68	■■■□□ 2.02
CCDC78-215	ENST00000538176	ISCA1	Q9BUE6	129 aa		27.68	■■■□□ 2.02
CCDC78-215	ENST00000538176	RRAGC	Q9HB90	399 aa		27.68	■■■□□ 2.02
CCDC78-215	ENST00000538176	DICER1	Q9UPY3	1922 aa	Known RBP	27.68	■■■□□ 2.02
CCDC78-215	ENST00000538176	DDX58	O95786	925 aa	Known RBP	27.67	■■■□□ 2.02
CCDC78-215	ENST00000538176	VEGFA	P15692	232 aa	Predicted RBP	27.67	■■■□□ 2.02
CCDC78-215	ENST00000538176	PSMD1	Q99460	953 aa		27.66	■■■□□ 2.02
CCDC78-215	ENST00000538176	HSP90B1	P14625	803 aa	Known RBP	27.65	■■■□□ 2.02
CCDC78-215	ENST00000538176	HSPA6	P17066	643 aa		27.65	■■■□□ 2.02
CCDC78-215	ENST00000538176	STK31	Q9BXU1	1019 aa		27.65	■■■□□ 2.02
CCDC78-215	ENST00000538176	TNRC6C	Q9HCJ0	1690 aa	Known RBP	27.65	■■■□□ 2.02
CCDC78-215	ENST00000538176	BBOX1	O75936	387 aa		27.64	■■■□□ 2.02
CCDC78-215	ENST00000538176	FSTL1	Q12841	308 aa		27.63	■■■□□ 2.01
CCDC78-215	ENST00000538176	TSR2	Q969E8	191 aa	Known RBP	27.63	■■■□□ 2.01
CCDC78-215	ENST00000538176	PHAX	Q9H814	394 aa	Known RBP	27.63	■■■□□ 2.01
CCDC78-215	ENST00000538176	PPEF1	O14829	653 aa	Predicted RBP	27.62	■■■□□ 2.01
CCDC78-215	ENST00000538176	TWISTNB	Q3B726	338 aa	Predicted RBP	27.62	■■■□□ 2.01
CCDC78-215	ENST00000538176	FAM9B	Q8IZU0	186 aa		27.62	■■■□□ 2.01
CCDC78-215	ENST00000538176	SYNE4	Q8N205	404 aa		27.62	■■■□□ 2.01
CCDC78-215	ENST00000538176	TIAM2	Q8IVF5	1701 aa		27.61	■■■□□ 2.01
CCDC78-215	ENST00000538176	DDX46	Q7L014	1031 aa	Known RBP	27.61	■■■□□ 2.01
CCDC78-215	ENST00000538176	TSPYL6	Q8N831	410 aa		27.61	■■■□□ 2.01
CCDC78-215	ENST00000538176	ATP5J2-PTCD1	G3V325	749 aa		27.6	■■■□□ 2.01
CCDC78-215	ENST00000538176	HCLS1	P14317	486 aa	Predicted RBP	27.6	■■■□□ 2.01
CCDC78-215	ENST00000538176	IARS	P41252	1262 aa	Known RBP	27.6	■■■□□ 2.01
CCDC78-215	ENST00000538176	TMC4	Q7Z404	712 aa		27.6	■■■□□ 2.01
CCDC78-215	ENST00000538176	VPS33B	Q9H267	617 aa		27.6	■■■□□ 2.01
CCDC78-215	ENST00000538176	C3orf67	Q6ZVT6	689 aa		27.59	■■■□□ 2.01
CCDC78-215	ENST00000538176	CCDC191	Q8NCU4	936 aa		27.59	■■■□□ 2.01
CCDC78-215	ENST00000538176	JDP2	Q8WYK2	163 aa		27.59	■■■□□ 2.01
CCDC78-215	ENST00000538176	ZNF277	Q9NRM2	450 aa	Predicted RBP	27.59	■■■□□ 2.01
CCDC78-215	ENST00000538176	ATP6V0A2	Q9Y487	856 aa		27.59	■■■□□ 2.01
CCDC78-215	ENST00000538176	OLFM4	Q6UX06	510 aa		27.58	■■■□□ 2.01
CCDC78-215	ENST00000538176	SF3B3	Q15393	1217 aa	Known RBP	27.57	■■■□□ 2
CCDC78-215	ENST00000538176	SP8	Q8IXZ3	490 aa		27.57	■■■□□ 2
CCDC78-215	ENST00000538176	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	27.57	■■■□□ 2
CCDC78-215	ENST00000538176	SMC1B	Q8NDV3	1235 aa		27.57	■■■□□ 2
CCDC78-215	ENST00000538176	FAM89A	Q96GI7	184 aa		27.57	■■■□□ 2
CCDC78-215	ENST00000538176	METTL22	Q9BUU2	404 aa	Predicted RBP	27.57	■■■□□ 2
CCDC78-215	ENST00000538176	APLP1	P51693	650 aa		27.56	■■■□□ 2
CCDC78-215	ENST00000538176	KSR2	Q6VAB6	950 aa		27.56	■■■□□ 2
CCDC78-215	ENST00000538176	SUPT20H	Q8NEM7	779 aa		27.56	■■■□□ 2
CCDC78-215	ENST00000538176	SALL2	Q9Y467	1007 aa	Predicted RBP	27.56	■■■□□ 2
CCDC78-215	ENST00000538176	ABCC4	O15439	1325 aa		27.56	■■■□□ 2
CCDC78-215	ENST00000538176	IQCA1L	A6NCM1	817 aa		27.55	■■■□□ 2
CCDC78-215	ENST00000538176	GRAP	Q13588	217 aa		27.55	■■■□□ 2
CCDC78-215	ENST00000538176	GRAPL	Q8TC17	118 aa	Predicted RBP	27.55	■■■□□ 2
CCDC78-215	ENST00000538176	MYH16	Q9H6N6	1097 aa		27.55	■■■□□ 2
CCDC78-215	ENST00000538176	SNED1	Q8TER0	1413 aa		27.55	■■■□□ 2
CCDC78-215	ENST00000538176	WDR90	Q96KV7	1748 aa		27.55	■■■□□ 2
CCDC78-215	ENST00000538176	FZD9	O00144	591 aa		27.54	■■■□□ 2
CCDC78-215	ENST00000538176	MYD88	Q99836	296 aa		27.54	■■■□□ 2
CCDC78-215	ENST00000538176	FANCI	Q9NVI1	1328 aa		27.54	■■■□□ 2
CCDC78-215	ENST00000538176	IRS4	O14654	1257 aa	Predicted RBP	27.53	■■■□□ 2
CCDC78-215	ENST00000538176	DDN	O94850	711 aa	Predicted RBP	27.53	■■■□□ 2
CCDC78-215	ENST00000538176	SLC4A2	P04920	1241 aa		27.53	■■■□□ 2
CCDC78-215	ENST00000538176	NEXN	Q0ZGT2	675 aa		27.53	■■■□□ 2
CCDC78-215	ENST00000538176	CWC25	Q9NXE8	425 aa	Predicted RBP	27.53	■■■□□ 2
CCDC78-215	ENST00000538176	POTEC	B2RU33	542 aa		27.52	■■■□□ 2
CCDC78-215	ENST00000538176	L3MBTL3	Q96JM7	780 aa	Predicted RBP	27.52	■■■□□ 2
CCDC78-215	ENST00000538176	MAP3K2	Q9Y2U5	619 aa		27.52	■■■□□ 2
CCDC78-215	ENST00000538176	PI4KAP2	A4QPH2	592 aa		27.51	■■□□□ 1.99
CCDC78-215	ENST00000538176	TCERG1	O14776	1098 aa	Known RBP	27.51	■■□□□ 1.99
CCDC78-215	ENST00000538176	PCCA	P05165	728 aa	Predicted RBP	27.51	■■□□□ 1.99
CCDC78-215	ENST00000538176	PI4KAP1	Q8N8J0	262 aa		27.51	■■□□□ 1.99

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