RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 HOXC9P31274 260 aa8.37□□□□□ -1.07
PTPRB-203ENST00000538174 FLT4P35916 1363 aa8.37□□□□□ -1.07
PTPRB-203ENST00000538174 PRPF38BQ5VTL8 546 aaKnown RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 CABP2Q9NPB3 220 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 DDX19BQ9UMR2 479 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 RBBP6Q7Z6E9 1792 aaKnown RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 AFDNP55196 1824 aaKnown RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 ERVV-2B6SEH9 535 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 APPP05067 770 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 IRX3P78415 501 aaPredicted RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 ZKSCAN2Q63HK3 967 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 ARHGAP27Q6ZUM4 889 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 FOXN1O15353 648 aa8.36□□□□□ -1.07
PTPRB-203ENST00000538174 TMPOP42166 694 aaKnown RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 MVPQ14764 893 aaKnown RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 SPINK5Q9NQ38 1064 aaPredicted RBP8.36□□□□□ -1.07
PTPRB-203ENST00000538174 LOC102724428A0A0B4J2F2 783 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 MAP2K2P36507 400 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 ECE1P42892 770 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 SIK1P57059 783 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 DPY19L2Q6NUT2 758 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 REM2Q8IYK8 340 aaPredicted RBP8.35□□□□□ -1.07
PTPRB-203ENST00000538174 RAPGEF4Q8WZA2 1011 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 RRAGCQ9HB90 399 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 SPG7Q9UQ90 795 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 DIAPH1O60610 1272 aaKnown RBP8.35□□□□□ -1.07
PTPRB-203ENST00000538174 MMP10P09238 476 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 ZNF853P0CG23 659 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 DPEP1P16444 411 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 TRAPPC3LQ5T215 181 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 RINLQ6ZS11 566 aa8.35□□□□□ -1.07
PTPRB-203ENST00000538174 RTCBQ9Y3I0 505 aaKnown RBP8.35□□□□□ -1.07
PTPRB-203ENST00000538174 HSP90AA2PQ14568 343 aaPredicted RBP8.34□□□□□ -1.07
PTPRB-203ENST00000538174 C20orf194Q5TEA3 1177 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 SMC5Q8IY18 1101 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 IFT57Q9NWB7 429 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 SAGE1Q9NXZ1 904 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 RNF181Q9P0P0 153 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 TMEM88BA6NKF7 163 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 MARCH6O60337 910 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 RGS3P49796 1198 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 TRIM35Q9UPQ4 493 aa8.34□□□□□ -1.07
PTPRB-203ENST00000538174 CACNA1FO60840 1977 aa8.34□□□□□ -1.08
PTPRB-203ENST00000538174 RIC1Q4ADV7 1423 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 APBB1IPQ7Z5R6 666 aaPredicted RBP8.33□□□□□ -1.08
PTPRB-203ENST00000538174 BABAM1Q9NWV8 329 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 BCS1LQ9Y276 419 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 UBR2Q8IWV8 1755 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 GYS1P13807 737 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 TM4SF1P30408 202 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 PSEN1P49768 467 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 NME8Q8N427 588 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 LINC00116Q8NCU8 138 aa8.33□□□□□ -1.08
PTPRB-203ENST00000538174 IBTKQ9P2D0 1353 aaPredicted RBP8.32□□□□□ -1.08
PTPRB-203ENST00000538174 TTC36A6NLP5 189 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 PLIN1O60240 522 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 NBPF11Q86T75 865 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 DZIP1LQ8IYY4 767 aaKnown RBP8.32□□□□□ -1.08
PTPRB-203ENST00000538174 USP42Q9H9J4 1324 aaKnown RBP8.32□□□□□ -1.08
PTPRB-203ENST00000538174 SCN11AQ9UI33 1791 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 BECN1Q14457 450 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 TSHZ1Q6ZSZ6 1077 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 PNMA8AQ86V59 439 aaPredicted RBP8.32□□□□□ -1.08
PTPRB-203ENST00000538174 CCDC88AQ3V6T2 1871 aa8.32□□□□□ -1.08
PTPRB-203ENST00000538174 CAPN15O75808 1086 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 BCAR3O75815 825 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 GNAI1P63096 354 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 NFE2L2Q16236 605 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 NOM1Q5C9Z4 860 aaKnown RBP8.31□□□□□ -1.08
PTPRB-203ENST00000538174 ATF7IPQ6VMQ6 1270 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 LAMB1P07942 1786 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 POTECB2RU33 542 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 TPD52L2O43399 206 aaKnown RBP8.31□□□□□ -1.08
PTPRB-203ENST00000538174 HTATSF1O43719 755 aaKnown RBP8.31□□□□□ -1.08
PTPRB-203ENST00000538174 MSL1Q68DK7 614 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 IFNLR1Q8IU57 520 aaPredicted RBP8.31□□□□□ -1.08
PTPRB-203ENST00000538174 CCDC146Q8IYE0 955 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 DDX54Q8TDD1 881 aaKnown RBP8.31□□□□□ -1.08
PTPRB-203ENST00000538174 COG3Q96JB2 828 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 VPS33BQ9H267 617 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 RBM27Q9P2N5 1060 aaKnown RBP8.31□□□□□ -1.08
PTPRB-203ENST00000538174 PPME1Q9Y570 386 aa8.31□□□□□ -1.08
PTPRB-203ENST00000538174 U2AF1L5P0DN76 240 aaPredicted RBP8.3□□□□□ -1.08
PTPRB-203ENST00000538174 U2AF1Q01081 240 aaKnown RBP eCLIP8.3□□□□□ -1.08
PTPRB-203ENST00000538174 NBPF20Q3BBV1 942 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 TMEM51Q9NW97 253 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 IL13P35225 146 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 EVI5LQ96CN4 794 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 ZBTB40Q9NUA8 1239 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 ANKRD31Q8N7Z5 1873 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 CDHR2Q9BYE9 1310 aa8.3□□□□□ -1.08
PTPRB-203ENST00000538174 STYK1Q6J9G0 422 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 POLKQ9UBT6 870 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 DLG5Q8TDM6 1919 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 EGFL6Q8IUX8 553 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 ANKRD13AQ8IZ07 590 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 PIGBQ92521 554 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 TBC1D32Q96NH3 1257 aa8.29□□□□□ -1.08
PTPRB-203ENST00000538174 UPF2Q9HAU5 1272 aaKnown RBP8.29□□□□□ -1.08
PTPRB-203ENST00000538174 POLRMTO00411 1230 aaKnown RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms