RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PDE6BP35913 854 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 SUSD4Q5VX71 490 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 ZKSCAN2Q63HK3 967 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 TTLL6Q8N841 843 aa15.12■□□□□ 0.01
CLIP1-208ENST00000537004 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-208ENST00000537004 RGL2O15211 777 aa15.11■□□□□ 0.01
CLIP1-208ENST00000537004 CEP350Q5VT06 3117 aa15.11■□□□□ 0.01
CLIP1-208ENST00000537004 TCERG1O14776 1098 aaKnown RBP15.1■□□□□ 0.01
CLIP1-208ENST00000537004 SRGNP10124 158 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 GTF2E1P29083 439 aaPredicted RBP15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ZNF34Q8IZ26 560 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 CLUAP1Q96AJ1 413 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 BCL11AQ9H165 835 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 DBF4Q9UBU7 674 aaPredicted RBP15.1■□□□□ 0.01
CLIP1-208ENST00000537004 BRCA1P38398 1863 aaKnown RBP15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ERFEQ4G0M1 354 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ZNF526Q8TF50 670 aaPredicted RBP15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ABCC12Q96J65 1359 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ATP10DQ9P241 1426 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ANKRD31Q8N7Z5 1873 aa15.1■□□□□ 0.01
CLIP1-208ENST00000537004 ALDH1L2Q3SY69 923 aa15.09■□□□□ 0.01
CLIP1-208ENST00000537004 PHAXQ9H814 394 aaKnown RBP15.09■□□□□ 0.01
CLIP1-208ENST00000537004 C21orf2O43822 256 aa15.09■□□□□ 0.01
CLIP1-208ENST00000537004 MS4A1P11836 297 aa15.09■□□□□ 0.01
CLIP1-208ENST00000537004 RASSF7Q02833 373 aa15.09■□□□□ 0.01
CLIP1-208ENST00000537004 AAMPQ13685 434 aa15.09■□□□□ 0.01
CLIP1-208ENST00000537004 DZIP1LQ8IYY4 767 aaKnown RBP15.09■□□□□ 0.01
CLIP1-208ENST00000537004 KIF16BQ96L93 1317 aa15.08■□□□□ 0
CLIP1-208ENST00000537004 FTSJ3Q8IY81 847 aaKnown RBP15.08■□□□□ 0
CLIP1-208ENST00000537004 SYNE4Q8N205 404 aa15.08■□□□□ 0
CLIP1-208ENST00000537004 NTSR2O95665 410 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 TRIM27P14373 513 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 KLRG2A4D1S0 409 aaPredicted RBP15.07■□□□□ 0
CLIP1-208ENST00000537004 MVPQ14764 893 aaKnown RBP15.07■□□□□ 0
CLIP1-208ENST00000537004 C9orf131Q5VYM1 1079 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 PRPF40BQ6NWY9 871 aaKnown RBP15.07■□□□□ 0
CLIP1-208ENST00000537004 ATF7IPQ6VMQ6 1270 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 ANKRD13DQ6ZTN6 518 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 C3orf67Q6ZVT6 689 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 MASTLQ96GX5 879 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 NYXQ9GZU5 481 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 HYPKQ9NX55 129 aa15.07■□□□□ 0
CLIP1-208ENST00000537004 NOB1Q9ULX3 412 aaKnown RBP15.07■□□□□ 0
CLIP1-208ENST00000537004 ADCY9O60503 1353 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 NUP98P52948 1817 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 ATP5J2-PTCD1G3V325 749 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 VAMP4O75379 141 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 PRELPP51888 382 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 TCIRG1Q13488 830 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 OLFM4Q6UX06 510 aa15.06■□□□□ 0
CLIP1-208ENST00000537004 COL11A2P13942 1736 aaPredicted RBP15.06■□□□□ 0
CLIP1-208ENST00000537004 STYK1Q6J9G0 422 aa15.05■□□□□ 0
CLIP1-208ENST00000537004 NLRP10Q86W26 655 aa15.05■□□□□ 0
CLIP1-208ENST00000537004 SKAP1Q86WV1 359 aa15.05■□□□□ 0
CLIP1-208ENST00000537004 PLBD2Q8NHP8 589 aa15.05■□□□□ 0
CLIP1-208ENST00000537004 NFKBIEO00221 500 aa15.05■□□□□ -0
CLIP1-208ENST00000537004 IPO8O15397 1037 aaKnown RBP15.05■□□□□ -0
CLIP1-208ENST00000537004 BRPF1P55201 1214 aaPredicted RBP15.05■□□□□ -0
CLIP1-208ENST00000537004 TWISTNBQ3B726 338 aaPredicted RBP15.05■□□□□ -0
CLIP1-208ENST00000537004 SLC51AQ86UW1 340 aa15.05■□□□□ -0
CLIP1-208ENST00000537004 RNF181Q9P0P0 153 aa15.05■□□□□ -0
CLIP1-208ENST00000537004 PDZRN3Q9UPQ7 1066 aa15.05■□□□□ -0
CLIP1-208ENST00000537004 IGHDP01880 384 aa15.04■□□□□ -0
CLIP1-208ENST00000537004 NPR1P16066 1061 aa15.04■□□□□ -0
CLIP1-208ENST00000537004 PARP10Q53GL7 1025 aa15.04■□□□□ -0
CLIP1-208ENST00000537004 PPP1R42Q7Z4L9 355 aa15.04■□□□□ -0
CLIP1-208ENST00000537004 CNKSR1Q969H4 720 aa15.04■□□□□ -0
CLIP1-208ENST00000537004 UTP14AQ9BVJ6 771 aaKnown RBP15.04■□□□□ -0
CLIP1-208ENST00000537004 HCLS1P14317 486 aaPredicted RBP15.04■□□□□ -0
CLIP1-208ENST00000537004 CCDC30Q5VVM6 783 aa15.04■□□□□ -0
CLIP1-208ENST00000537004 CRY2Q49AN0 593 aa15.03■□□□□ -0
CLIP1-208ENST00000537004 HSP90AB3PQ58FF7 597 aa15.03■□□□□ -0
CLIP1-208ENST00000537004 RTL5Q5HYW3 569 aaPredicted RBP15.03■□□□□ -0
CLIP1-208ENST00000537004 TRMT112Q9UI30 125 aaKnown RBP15.03■□□□□ -0
CLIP1-208ENST00000537004 CACNA1FO60840 1977 aa15.03■□□□□ -0
CLIP1-208ENST00000537004 ARFGEF1Q9Y6D6 1849 aa15.03■□□□□ -0
CLIP1-208ENST00000537004 RIC3Q7Z5B4 369 aa15.02■□□□□ -0
CLIP1-208ENST00000537004 TNRC6CQ9HCJ0 1690 aaKnown RBP15.02■□□□□ -0
CLIP1-208ENST00000537004 DLEC1Q9Y238 1755 aa15.02□□□□□ -0.01
CLIP1-208ENST00000537004 G2E3Q7L622 706 aa15.02□□□□□ -0.01
CLIP1-208ENST00000537004 MRPL50Q8N5N7 158 aaKnown RBP15.02□□□□□ -0.01
CLIP1-208ENST00000537004 C7orf43Q8WVR3 580 aa15.02□□□□□ -0.01
CLIP1-208ENST00000537004 GPBP1L1Q9HC44 474 aaPredicted RBP15.02□□□□□ -0.01
CLIP1-208ENST00000537004 PCDHB15Q9Y5E8 787 aa15.02□□□□□ -0.01
CLIP1-208ENST00000537004 SLX4Q8IY92 1834 aa15.01□□□□□ -0.01
CLIP1-208ENST00000537004 IBTKQ9P2D0 1353 aaPredicted RBP15.01□□□□□ -0.01
CLIP1-208ENST00000537004 ITPRIPQ8IWB1 547 aa15.01□□□□□ -0.01
CLIP1-208ENST00000537004 FAM89AQ96GI7 184 aa15.01□□□□□ -0.01
CLIP1-208ENST00000537004 ISCA1Q9BUE6 129 aa15.01□□□□□ -0.01
CLIP1-208ENST00000537004 DDX19BQ9UMR2 479 aa15.01□□□□□ -0.01
CLIP1-208ENST00000537004 SLC4A2P04920 1241 aa15□□□□□ -0.01
CLIP1-208ENST00000537004 LMNB1P20700 586 aa15□□□□□ -0.01
CLIP1-208ENST00000537004 TMEM57Q8N5G2 664 aa15□□□□□ -0.01
CLIP1-208ENST00000537004 RPGRQ92834 1020 aaKnown RBP15□□□□□ -0.01
CLIP1-208ENST00000537004 NLRP3Q96P20 1036 aa15□□□□□ -0.01
CLIP1-208ENST00000537004 MYD88Q99836 296 aa15□□□□□ -0.01
CLIP1-208ENST00000537004 STK31Q9BXU1 1019 aa15□□□□□ -0.01
CLIP1-208ENST00000537004 PDE4AP27815 886 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 SLC10A5Q5PT55 438 aa14.99□□□□□ -0.01
CLIP1-208ENST00000537004 ARHGAP45Q92619 1136 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms