RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CCDC171Q6TFL3 1326 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 ADCK5Q3MIX3 580 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.81■□□□□ 0.12
LDLR-203ENST00000535915 HIP1O00291 1037 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 KCNJ4P48050 445 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 PIP4K2AP48426 406 aaPredicted RBP15.81■□□□□ 0.12
LDLR-203ENST00000535915 FAM227BQ96M60 508 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 PDRG1Q9NUG6 133 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 SMC3Q9UQE7 1217 aa15.81■□□□□ 0.12
LDLR-203ENST00000535915 CHRNA2Q15822 529 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 ANKRD13DQ6ZTN6 518 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 BOLA2Q9H3K6 86 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 USP16Q9Y5T5 823 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 CYP46A1Q9Y6A2 500 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 SNRPA1P09661 255 aaKnown RBP15.8■□□□□ 0.12
LDLR-203ENST00000535915 ZKSCAN1P17029 563 aaPredicted RBP15.8■□□□□ 0.12
LDLR-203ENST00000535915 NMIQ13287 307 aaPredicted RBP15.8■□□□□ 0.12
LDLR-203ENST00000535915 VPS53Q5VIR6 699 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 USP48Q86UV5 1035 aa15.8■□□□□ 0.12
LDLR-203ENST00000535915 SYAP1Q96A49 352 aaPredicted RBP15.8■□□□□ 0.12
LDLR-203ENST00000535915 TMEM94Q12767 1356 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 ARFGEF2Q9Y6D5 1785 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 NECTIN1Q15223 517 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 EPHA10Q5JZY3 1008 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 DCAF5Q96JK2 942 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 FSD1Q9BTV5 496 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 RBM8AQ9Y5S9 174 aaKnown RBP15.79■□□□□ 0.12
LDLR-203ENST00000535915 STX6O43752 255 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 GADD45BO75293 160 aaPredicted RBP15.79■□□□□ 0.12
LDLR-203ENST00000535915 LARGE1O95461 756 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 ZSCAN22P10073 491 aaPredicted RBP15.79■□□□□ 0.12
LDLR-203ENST00000535915 TM6SF1Q9BZW5 370 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 ZSWIM6Q9HCJ5 1215 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 STRCP1A6NGW2 1772 aa15.79■□□□□ 0.12
LDLR-203ENST00000535915 CYP27B1O15528 508 aa15.78■□□□□ 0.12
LDLR-203ENST00000535915 SYT1P21579 422 aa15.78■□□□□ 0.12
LDLR-203ENST00000535915 CCDC83Q8IWF9 413 aa15.78■□□□□ 0.12
LDLR-203ENST00000535915 JARID2Q92833 1246 aaPredicted RBP15.78■□□□□ 0.12
LDLR-203ENST00000535915 RRP9O43818 475 aaKnown RBP15.78■□□□□ 0.12
LDLR-203ENST00000535915 PKD1L3Q7Z443 1732 aa15.78■□□□□ 0.12
LDLR-203ENST00000535915 DDX54Q8TDD1 881 aaKnown RBP15.78■□□□□ 0.12
LDLR-203ENST00000535915 KCNB2Q92953 911 aa15.78■□□□□ 0.12
LDLR-203ENST00000535915 FMNL2Q96PY5 1086 aa15.78■□□□□ 0.12
LDLR-203ENST00000535915 CREB3L3Q68CJ9 461 aa15.77■□□□□ 0.12
LDLR-203ENST00000535915 ABCC6O95255 1503 aa15.77■□□□□ 0.11
LDLR-203ENST00000535915 MAP4K1Q92918 833 aa15.77■□□□□ 0.11
LDLR-203ENST00000535915 ZSCAN31Q96LW9 406 aaPredicted RBP15.77■□□□□ 0.11
LDLR-203ENST00000535915 MRC1P22897 1456 aa15.77■□□□□ 0.11
LDLR-203ENST00000535915 A0A0D9SFI3 127 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 CABP4P57796 275 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 LRP10Q7Z4F1 713 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 CNPY2Q9Y2B0 182 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 GJB2P29033 226 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 UBE3BQ7Z3V4 1068 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 ZSCAN30Q86W11 494 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 SH2B1Q9NRF2 756 aaPredicted RBP15.76■□□□□ 0.11
LDLR-203ENST00000535915 TNS3Q68CZ2 1445 aa15.76■□□□□ 0.11
LDLR-203ENST00000535915 LAMB4A4D0S4 1761 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 F13A1P00488 732 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 RNF214Q8ND24 703 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 COPRSQ9NQ92 184 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 ATP6V1DQ9Y5K8 247 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 ATP5J2-PTCD1G3V325 749 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 SLC27A2O14975 620 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 DTNBO60941 627 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 PTCD1O75127 700 aaKnown RBP15.75■□□□□ 0.11
LDLR-203ENST00000535915 PHF14O94880 888 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 TPRNQ4KMQ1 711 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 TMEM87AQ8NBN3 555 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 PDLIM2Q96JY6 352 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 TSPY26PQ9H489 355 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 DCCP43146 1447 aa15.75■□□□□ 0.11
LDLR-203ENST00000535915 MSNP26038 577 aaKnown RBP15.74■□□□□ 0.11
LDLR-203ENST00000535915 PSMA5P28066 241 aa15.74■□□□□ 0.11
LDLR-203ENST00000535915 RNF20Q5VTR2 975 aa15.74■□□□□ 0.11
LDLR-203ENST00000535915 PTPN12Q05209 780 aaKnown RBP15.74■□□□□ 0.11
LDLR-203ENST00000535915 ME3Q16798 604 aa15.74■□□□□ 0.11
LDLR-203ENST00000535915 SNRKQ9NRH2 765 aa15.74■□□□□ 0.11
LDLR-203ENST00000535915 A0A087WZG4 1122 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 TFCP2Q12800 502 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 CADPS2Q86UW7 1296 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 EDC3Q96F86 508 aaKnown RBP15.73■□□□□ 0.11
LDLR-203ENST00000535915 RFX5P48382 616 aaPredicted RBP15.73■□□□□ 0.11
LDLR-203ENST00000535915 TNNI3KQ59H18 835 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 NECAB1Q8N987 351 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 DBNLQ9UJU6 430 aaKnown RBP15.73■□□□□ 0.11
LDLR-203ENST00000535915 FPGT-TNNI3KV9GXZ4 949 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 MED23Q9ULK4 1368 aa15.73■□□□□ 0.11
LDLR-203ENST00000535915 TPCN1Q9ULQ1 816 aa15.72■□□□□ 0.11
LDLR-203ENST00000535915 PLEKHG2Q9H7P9 1386 aa15.72■□□□□ 0.11
LDLR-203ENST00000535915 FIBPO43427 364 aa15.72■□□□□ 0.11
LDLR-203ENST00000535915 RABL6Q3YEC7 729 aaPredicted RBP15.72■□□□□ 0.11
LDLR-203ENST00000535915 HS1BP3Q53T59 392 aa15.72■□□□□ 0.11
LDLR-203ENST00000535915 ZNF589Q86UQ0 364 aaPredicted RBP15.72■□□□□ 0.11
LDLR-203ENST00000535915 SPATA31A3Q5VYP0 1347 aa15.72■□□□□ 0.11
LDLR-203ENST00000535915 ATP5JP18859 108 aa15.71■□□□□ 0.11
LDLR-203ENST00000535915 ST3GAL1Q11201 340 aa15.71■□□□□ 0.11
LDLR-203ENST00000535915 BLOC1S2Q6QNY1 142 aa15.71■□□□□ 0.11
LDLR-203ENST00000535915 PLBD2Q8NHP8 589 aa15.71■□□□□ 0.11
LDLR-203ENST00000535915 MTMR6Q9Y217 621 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms