RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 ZNF622Q969S3 477 aaKnown RBP eCLIP6.6□□□□□ -1.35
USH1C-210ENST00000534556 DUOX1Q9NRD9 1551 aa6.6□□□□□ -1.35
USH1C-210ENST00000534556 PSME4Q14997 1843 aa6.6□□□□□ -1.35
USH1C-210ENST00000534556 FANCIQ9NVI1 1328 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 ATP5J2-PTCD1G3V325 749 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 TCIRG1Q13488 830 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 CRY2Q49AN0 593 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 C9orf131Q5VYM1 1079 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 STYK1Q6J9G0 422 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 PRPF40BQ6NWY9 871 aaKnown RBP6.59□□□□□ -1.35
USH1C-210ENST00000534556 KIF6Q6ZMV9 814 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 ZNF526Q8TF50 670 aaPredicted RBP6.59□□□□□ -1.35
USH1C-210ENST00000534556 JARID2Q92833 1246 aaPredicted RBP6.59□□□□□ -1.35
USH1C-210ENST00000534556 ISCA1Q9BUE6 129 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 ZNF652Q9Y2D9 606 aa6.59□□□□□ -1.35
USH1C-210ENST00000534556 WDR90Q96KV7 1748 aa6.59□□□□□ -1.36
USH1C-210ENST00000534556 IBTKQ9P2D0 1353 aaPredicted RBP6.58□□□□□ -1.36
USH1C-210ENST00000534556 IL16Q14005 1332 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 KIF3CO14782 793 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 VAMP4O75379 141 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 HCLS1P14317 486 aaPredicted RBP6.58□□□□□ -1.36
USH1C-210ENST00000534556 PDE6BP35913 854 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 EXOSC9Q06265 439 aaKnown RBP6.58□□□□□ -1.36
USH1C-210ENST00000534556 NCBP3Q53F19 620 aaKnown RBP6.58□□□□□ -1.36
USH1C-210ENST00000534556 SLC10A5Q5PT55 438 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 TPTE2Q6XPS3 522 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 ANKRD13DQ6ZTN6 518 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 MIER1Q8N108 512 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 PLBD2Q8NHP8 589 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 NMRK2Q9NPI5 230 aa6.58□□□□□ -1.36
USH1C-210ENST00000534556 DBF4Q9UBU7 674 aaPredicted RBP6.58□□□□□ -1.36
USH1C-210ENST00000534556 SCN4AP35499 1836 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 POTECB2RU33 542 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 IGKV5-2P06315 115 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 NPR1P16066 1061 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 HOXA10P31260 410 aaPredicted RBP6.57□□□□□ -1.36
USH1C-210ENST00000534556 ST5P78524 1137 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 TWISTNBQ3B726 338 aaPredicted RBP6.57□□□□□ -1.36
USH1C-210ENST00000534556 RTL5Q5HYW3 569 aaPredicted RBP6.57□□□□□ -1.36
USH1C-210ENST00000534556 IFFO2Q5TF58 517 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 NPM2Q86SE8 214 aaKnown RBP6.57□□□□□ -1.36
USH1C-210ENST00000534556 WDR63Q8IWG1 891 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 CDCA7LQ96GN5 454 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 MASTLQ96GX5 879 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 HYPKQ9NX55 129 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 RNF181Q9P0P0 153 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 ADAMTSL1Q8N6G6 1762 aa6.57□□□□□ -1.36
USH1C-210ENST00000534556 TRIM28Q13263 835 aaKnown RBP6.56□□□□□ -1.36
USH1C-210ENST00000534556 PARP10Q53GL7 1025 aa6.56□□□□□ -1.36
USH1C-210ENST00000534556 FAM89AQ96GI7 184 aa6.56□□□□□ -1.36
USH1C-210ENST00000534556 MYD88Q99836 296 aa6.56□□□□□ -1.36
USH1C-210ENST00000534556 UTP14AQ9BVJ6 771 aaKnown RBP6.56□□□□□ -1.36
USH1C-210ENST00000534556 NYXQ9GZU5 481 aa6.56□□□□□ -1.36
USH1C-210ENST00000534556 ABCC4O15439 1325 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 LTBP3Q9NS15 1303 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 PI4KAP2A4QPH2 592 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 WTIPA6NIX2 430 aaPredicted RBP6.55□□□□□ -1.36
USH1C-210ENST00000534556 LMNB1P20700 586 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 C1QTNF8P60827 252 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 CALD1Q05682 793 aaKnown RBP6.55□□□□□ -1.36
USH1C-210ENST00000534556 CWF19L2Q2TBE0 894 aaKnown RBP6.55□□□□□ -1.36
USH1C-210ENST00000534556 PPP1R42Q7Z4L9 355 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 TRMT2AQ8IZ69 625 aaKnown RBP6.55□□□□□ -1.36
USH1C-210ENST00000534556 PI4KAP1Q8N8J0 262 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 CNKSR1Q969H4 720 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 TRMT112Q9UI30 125 aaKnown RBP6.55□□□□□ -1.36
USH1C-210ENST00000534556 PDZRN3Q9UPQ7 1066 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 MAP3K2Q9Y2U5 619 aa6.55□□□□□ -1.36
USH1C-210ENST00000534556 TRPM7Q96QT4 1865 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 F6X3S4 739 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 CCER2I3L3R5 266 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 NPHP1O15259 732 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 SLC4A2P04920 1241 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 GTF2E1P29083 439 aaPredicted RBP6.54□□□□□ -1.36
USH1C-210ENST00000534556 CASP7P55210 303 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 SLFN5Q08AF3 891 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 CCDC30Q5VVM6 783 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 RIC3Q7Z5B4 369 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 CELF1Q92879 486 aaKnown RBP6.54□□□□□ -1.36
USH1C-210ENST00000534556 CRAMP1Q96RY5 1269 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 METTL22Q9BUU2 404 aaPredicted RBP6.54□□□□□ -1.36
USH1C-210ENST00000534556 RRAGCQ9HB90 399 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 GPBP1L1Q9HC44 474 aaPredicted RBP6.54□□□□□ -1.36
USH1C-210ENST00000534556 SEC31BQ9NQW1 1179 aa6.54□□□□□ -1.36
USH1C-210ENST00000534556 ZNF277Q9NRM2 450 aaPredicted RBP6.54□□□□□ -1.36
USH1C-210ENST00000534556 SH3TC1Q8TE82 1336 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 ZNF541Q9H0D2 1346 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 NEURL1BA8MQ27 555 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 IRS4O14654 1257 aaPredicted RBP6.53□□□□□ -1.36
USH1C-210ENST00000534556 FKBP4Q02790 459 aaKnown RBP eCLIP6.53□□□□□ -1.36
USH1C-210ENST00000534556 FLIIQ13045 1269 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 SF3B3Q15393 1217 aaKnown RBP6.53□□□□□ -1.36
USH1C-210ENST00000534556 CCDC93Q567U6 631 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 HSP90AB3PQ58FF7 597 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 KSR2Q6VAB6 950 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 NLRP3Q96P20 1036 aa6.53□□□□□ -1.36
USH1C-210ENST00000534556 RNF123Q5XPI4 1314 aa6.52□□□□□ -1.37
USH1C-210ENST00000534556 GLTPD2A6NH11 291 aa6.52□□□□□ -1.37
USH1C-210ENST00000534556 PPEF1O14829 653 aaPredicted RBP6.52□□□□□ -1.37
USH1C-210ENST00000534556 DDNO94850 711 aaPredicted RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms