RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 NARFQ9UHQ1 456 aa19.94■□□□□ 0.78
TRIM3-213ENST00000533309 HDAC5Q9UQL6 1122 aa19.94■□□□□ 0.78
TRIM3-213ENST00000533309 EPHA10Q5JZY3 1008 aa19.93■□□□□ 0.78
TRIM3-213ENST00000533309 PPP1R42Q7Z4L9 355 aa19.93■□□□□ 0.78
TRIM3-213ENST00000533309 SSH3Q8TE77 659 aa19.93■□□□□ 0.78
TRIM3-213ENST00000533309 ARHGEF1Q92888 912 aaKnown RBP19.93■□□□□ 0.78
TRIM3-213ENST00000533309 DCTPP1Q9H773 170 aa19.93■□□□□ 0.78
TRIM3-213ENST00000533309 HMMRO75330 724 aa19.92■□□□□ 0.78
TRIM3-213ENST00000533309 POLA2Q14181 598 aa19.92■□□□□ 0.78
TRIM3-213ENST00000533309 CLEC4GQ6UXB4 293 aa19.92■□□□□ 0.78
TRIM3-213ENST00000533309 SRP68Q9UHB9 627 aaKnown RBP19.92■□□□□ 0.78
TRIM3-213ENST00000533309 USP42Q9H9J4 1324 aaKnown RBP19.92■□□□□ 0.78
TRIM3-213ENST00000533309 PHF14O94880 888 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 PCCAP05165 728 aaPredicted RBP19.91■□□□□ 0.78
TRIM3-213ENST00000533309 ADRA2BP18089 450 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 GCC1Q96CN9 775 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 ZNF652Q9Y2D9 606 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 LAMB2P55268 1798 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.91■□□□□ 0.78
TRIM3-213ENST00000533309 HMGB2P26583 209 aaKnown RBP19.91■□□□□ 0.78
TRIM3-213ENST00000533309 ZNF827Q17R98 1081 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 RABL6Q3YEC7 729 aaPredicted RBP19.91■□□□□ 0.78
TRIM3-213ENST00000533309 RTL5Q5HYW3 569 aaPredicted RBP19.91■□□□□ 0.78
TRIM3-213ENST00000533309 TRAPPC3LQ5T215 181 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 USPL1Q5W0Q7 1092 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 ZBTB38Q8NAP3 1195 aaPredicted RBP19.91■□□□□ 0.78
TRIM3-213ENST00000533309 AKT1S1Q96B36 256 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 CAMKK2Q96RR4 588 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 PDZRN3Q9UPQ7 1066 aa19.91■□□□□ 0.78
TRIM3-213ENST00000533309 SRGAP3O43295 1099 aa19.9■□□□□ 0.78
TRIM3-213ENST00000533309 SSFA2P28290 1259 aa19.9■□□□□ 0.78
TRIM3-213ENST00000533309 DDX60Q8IY21 1712 aaKnown RBP19.9■□□□□ 0.78
TRIM3-213ENST00000533309 FOXO4P98177 505 aa19.89■□□□□ 0.77
TRIM3-213ENST00000533309 EN1Q05925 392 aaPredicted RBP19.89■□□□□ 0.77
TRIM3-213ENST00000533309 FAM89AQ96GI7 184 aa19.89■□□□□ 0.77
TRIM3-213ENST00000533309 NIP7Q9Y221 180 aaKnown RBP eCLIP19.89■□□□□ 0.77
TRIM3-213ENST00000533309 CASZ1Q86V15 1759 aa19.88■□□□□ 0.77
TRIM3-213ENST00000533309 ZPR1O75312 459 aa19.88■□□□□ 0.77
TRIM3-213ENST00000533309 EZH2Q15910 746 aaKnown RBP19.88■□□□□ 0.77
TRIM3-213ENST00000533309 SYNE4Q8N205 404 aa19.88■□□□□ 0.77
TRIM3-213ENST00000533309 CDHR2Q9BYE9 1310 aa19.88■□□□□ 0.77
TRIM3-213ENST00000533309 RFC4P35249 363 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 NUCB1Q02818 461 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 PARP10Q53GL7 1025 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 SUSD4Q5VX71 490 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 QSER1Q2KHR3 1735 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 TBC1D9BQ66K14 1250 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 PLA2G12BQ9BX93 195 aa19.87■□□□□ 0.77
TRIM3-213ENST00000533309 TRMT112Q9UI30 125 aaKnown RBP19.87■□□□□ 0.77
TRIM3-213ENST00000533309 NTSR2O95665 410 aa19.86■□□□□ 0.77
TRIM3-213ENST00000533309 EXOC6BQ9Y2D4 811 aa19.86■□□□□ 0.77
TRIM3-213ENST00000533309 LMBR1LQ6UX01 489 aa19.84■□□□□ 0.77
TRIM3-213ENST00000533309 UTP14AQ9BVJ6 771 aaKnown RBP19.84■□□□□ 0.77
TRIM3-213ENST00000533309 BAG6P46379 1132 aa19.84■□□□□ 0.77
TRIM3-213ENST00000533309 ANKRD45Q5TZF3 282 aa19.84■□□□□ 0.77
TRIM3-213ENST00000533309 DEFB132Q7Z7B7 95 aa19.84■□□□□ 0.77
TRIM3-213ENST00000533309 CHD1LQ86WJ1 897 aa19.84■□□□□ 0.77
TRIM3-213ENST00000533309 TFCP2L1Q9NZI6 479 aa19.84■□□□□ 0.77
TRIM3-213ENST00000533309 SH3TC1Q8TE82 1336 aa19.83■□□□□ 0.77
TRIM3-213ENST00000533309 FAM177BA6PVY3 158 aa19.83■□□□□ 0.76
TRIM3-213ENST00000533309 IRS4O14654 1257 aaPredicted RBP19.83■□□□□ 0.76
TRIM3-213ENST00000533309 PDE4AP27815 886 aa19.83■□□□□ 0.76
TRIM3-213ENST00000533309 RFX5P48382 616 aaPredicted RBP19.83■□□□□ 0.76
TRIM3-213ENST00000533309 SF3B2Q13435 895 aaKnown RBP19.83■□□□□ 0.76
TRIM3-213ENST00000533309 LNPKQ9C0E8 428 aa19.83■□□□□ 0.76
TRIM3-213ENST00000533309 ANO8Q9HCE9 1232 aaPredicted RBP19.83■□□□□ 0.76
TRIM3-213ENST00000533309 NOP58Q9Y2X3 529 aaKnown RBP19.83■□□□□ 0.76
TRIM3-213ENST00000533309 GYS1P13807 737 aa19.82■□□□□ 0.76
TRIM3-213ENST00000533309 BICDL1Q6ZP65 573 aa19.82■□□□□ 0.76
TRIM3-213ENST00000533309 PA2G4Q9UQ80 394 aaKnown RBP19.82■□□□□ 0.76
TRIM3-213ENST00000533309 SURF6O75683 361 aaKnown RBP19.81■□□□□ 0.76
TRIM3-213ENST00000533309 RGS3P49796 1198 aa19.81■□□□□ 0.76
TRIM3-213ENST00000533309 PNPLA7Q6ZV29 1317 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 APBB1O00213 710 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 CSF1RP07333 972 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 COL23A1Q86Y22 540 aaPredicted RBP19.8■□□□□ 0.76
TRIM3-213ENST00000533309 SETDB2Q96T68 719 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 CTSWP56202 376 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 PTPN12Q05209 780 aaKnown RBP19.8■□□□□ 0.76
TRIM3-213ENST00000533309 NFIXQ14938 502 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 NUTM1Q86Y26 1132 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 KLHDC4Q8TBB5 520 aa19.8■□□□□ 0.76
TRIM3-213ENST00000533309 SMARCA5O60264 1052 aaPredicted RBP19.79■□□□□ 0.76
TRIM3-213ENST00000533309 PDE8AO60658 829 aa19.79■□□□□ 0.76
TRIM3-213ENST00000533309 CCDC125Q86Z20 511 aa19.79■□□□□ 0.76
TRIM3-213ENST00000533309 TTLL11Q8NHH1 800 aa19.79■□□□□ 0.76
TRIM3-213ENST00000533309 COPRSQ9NQ92 184 aa19.79■□□□□ 0.76
TRIM3-213ENST00000533309 CARMIL3Q8ND23 1372 aa19.78■□□□□ 0.76
TRIM3-213ENST00000533309 ABCC12Q96J65 1359 aa19.78■□□□□ 0.76
TRIM3-213ENST00000533309 HCLS1P14317 486 aaPredicted RBP19.78■□□□□ 0.76
TRIM3-213ENST00000533309 FAM161AQ3B820 660 aa19.78■□□□□ 0.76
TRIM3-213ENST00000533309 FLAD1Q8NFF5 587 aa19.78■□□□□ 0.76
TRIM3-213ENST00000533309 CHMP3Q9Y3E7 222 aa19.78■□□□□ 0.76
TRIM3-213ENST00000533309 RAB11FIP3O75154 756 aa19.77■□□□□ 0.76
TRIM3-213ENST00000533309 SLC15A2Q16348 729 aa19.77■□□□□ 0.76
TRIM3-213ENST00000533309 ERFEQ4G0M1 354 aa19.77■□□□□ 0.76
TRIM3-213ENST00000533309 PELP1Q8IZL8 1130 aaKnown RBP19.77■□□□□ 0.76
TRIM3-213ENST00000533309 LRRCC1Q9C099 1032 aa19.77■□□□□ 0.76
TRIM3-213ENST00000533309 TNRC6CQ9HCJ0 1690 aaKnown RBP19.77■□□□□ 0.76
TRIM3-213ENST00000533309 HSP90AB4PQ58FF6 505 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms