RNA–Protein interactions for RNA: ENST00000533069.1

PKP3-209, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 590 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-209ENST00000533069 NLRP10Q86W26 655 aa21.5■■□□□ 1.03
PKP3-209ENST00000533069 FAM9BQ8IZU0 186 aa21.5■■□□□ 1.03
PKP3-209ENST00000533069 TSR2Q969E8 191 aaKnown RBP21.5■■□□□ 1.03
PKP3-209ENST00000533069 TNRC6CQ9HCJ0 1690 aaKnown RBP21.5■■□□□ 1.03
PKP3-209ENST00000533069 ARFGEF2Q9Y6D5 1785 aa21.49■■□□□ 1.03
PKP3-209ENST00000533069 SENP3-EIF4A1A0A087X0R7 540 aa21.49■■□□□ 1.03
PKP3-209ENST00000533069 CCDC30Q5VVM6 783 aa21.49■■□□□ 1.03
PKP3-209ENST00000533069 WDR63Q8IWG1 891 aa21.49■■□□□ 1.03
PKP3-209ENST00000533069 RPGRQ92834 1020 aaKnown RBP21.49■■□□□ 1.03
PKP3-209ENST00000533069 TAOK3Q9H2K8 898 aa21.49■■□□□ 1.03
PKP3-209ENST00000533069 HOXA10P31260 410 aaPredicted RBP21.48■■□□□ 1.03
PKP3-209ENST00000533069 GOLGA2Q08379 1002 aa21.48■■□□□ 1.03
PKP3-209ENST00000533069 CCDC93Q567U6 631 aa21.48■■□□□ 1.03
PKP3-209ENST00000533069 SLC10A5Q5PT55 438 aa21.48■■□□□ 1.03
PKP3-209ENST00000533069 C7orf43Q8WVR3 580 aa21.48■■□□□ 1.03
PKP3-209ENST00000533069 KDM2BQ8NHM5 1336 aa21.48■■□□□ 1.03
PKP3-209ENST00000533069 NLRP3Q96P20 1036 aa21.47■■□□□ 1.03
PKP3-209ENST00000533069 ANKRD36CQ5JPF3 1778 aa21.46■■□□□ 1.03
PKP3-209ENST00000533069 PRELPP51888 382 aa21.46■■□□□ 1.03
PKP3-209ENST00000533069 SH3TC1Q8TE82 1336 aa21.46■■□□□ 1.03
PKP3-209ENST00000533069 TSPYL6Q8N831 410 aa21.45■■□□□ 1.02
PKP3-209ENST00000533069 RBM17Q96I25 401 aaKnown RBP21.45■■□□□ 1.02
PKP3-209ENST00000533069 CRAMP1Q96RY5 1269 aa21.45■■□□□ 1.02
PKP3-209ENST00000533069 ISCA1Q9BUE6 129 aa21.45■■□□□ 1.02
PKP3-209ENST00000533069 TRMT112Q9UI30 125 aaKnown RBP21.45■■□□□ 1.02
PKP3-209ENST00000533069 SLX4Q8IY92 1834 aa21.45■■□□□ 1.02
PKP3-209ENST00000533069 KIF3CO14782 793 aa21.44■■□□□ 1.02
PKP3-209ENST00000533069 DDX58O95786 925 aaKnown RBP21.44■■□□□ 1.02
PKP3-209ENST00000533069 TWISTNBQ3B726 338 aaPredicted RBP21.44■■□□□ 1.02
PKP3-209ENST00000533069 CC2D2BQ6DHV5 1058 aa21.44■■□□□ 1.02
PKP3-209ENST00000533069 RIC3Q7Z5B4 369 aa21.44■■□□□ 1.02
PKP3-209ENST00000533069 RTKN2Q8IZC4 609 aa21.44■■□□□ 1.02
PKP3-209ENST00000533069 STK31Q9BXU1 1019 aa21.44■■□□□ 1.02
PKP3-209ENST00000533069 PHAXQ9H814 394 aaKnown RBP21.44■■□□□ 1.02
PKP3-209ENST00000533069 SALL2Q9Y467 1007 aaPredicted RBP21.44■■□□□ 1.02
PKP3-209ENST00000533069 FANCIQ9NVI1 1328 aa21.44■■□□□ 1.02
PKP3-209ENST00000533069 TRIM28Q13263 835 aaKnown RBP21.43■■□□□ 1.02
PKP3-209ENST00000533069 FKBP4Q02790 459 aaKnown RBP eCLIP21.42■■□□□ 1.02
PKP3-209ENST00000533069 FER1L6Q2WGJ9 1857 aa21.42■■□□□ 1.02
PKP3-209ENST00000533069 GRIPAP1Q4V328 841 aa21.42■■□□□ 1.02
PKP3-209ENST00000533069 C3orf67Q6ZVT6 689 aa21.42■■□□□ 1.02
PKP3-209ENST00000533069 NMRK2Q9NPI5 230 aa21.42■■□□□ 1.02
PKP3-209ENST00000533069 SBF1O95248 1867 aa21.41■■□□□ 1.02
PKP3-209ENST00000533069 GLTPD2A6NH11 291 aa21.4■■□□□ 1.02
PKP3-209ENST00000533069 ATP5J2-PTCD1G3V325 749 aa21.4■■□□□ 1.02
PKP3-209ENST00000533069 MYH16Q9H6N6 1097 aa21.4■■□□□ 1.02
PKP3-209ENST00000533069 TIAM2Q8IVF5 1701 aa21.39■■□□□ 1.01
PKP3-209ENST00000533069 PPEF1O14829 653 aaPredicted RBP21.39■■□□□ 1.01
PKP3-209ENST00000533069 HCLS1P14317 486 aaPredicted RBP21.39■■□□□ 1.01
PKP3-209ENST00000533069 PSMD1Q99460 953 aa21.39■■□□□ 1.01
PKP3-209ENST00000533069 SNED1Q8TER0 1413 aa21.38■■□□□ 1.01
PKP3-209ENST00000533069 TOMM70O94826 608 aa21.38■■□□□ 1.01
PKP3-209ENST00000533069 DPY19L2Q6NUT2 758 aa21.38■■□□□ 1.01
PKP3-209ENST00000533069 OLFM4Q6UX06 510 aa21.38■■□□□ 1.01
PKP3-209ENST00000533069 CACNA1SQ13698 1873 aa21.38■■□□□ 1.01
PKP3-209ENST00000533069 HSP90B1P14625 803 aaKnown RBP21.37■■□□□ 1.01
PKP3-209ENST00000533069 SYNE4Q8N205 404 aa21.37■■□□□ 1.01
PKP3-209ENST00000533069 CCDC191Q8NCU4 936 aa21.37■■□□□ 1.01
PKP3-209ENST00000533069 FAM89AQ96GI7 184 aa21.37■■□□□ 1.01
PKP3-209ENST00000533069 MYD88Q99836 296 aa21.37■■□□□ 1.01
PKP3-209ENST00000533069 METTL22Q9BUU2 404 aaPredicted RBP21.37■■□□□ 1.01
PKP3-209ENST00000533069 TMX4Q9H1E5 349 aaPredicted RBP21.37■■□□□ 1.01
PKP3-209ENST00000533069 ABCC4O15439 1325 aa21.36■■□□□ 1.01
PKP3-209ENST00000533069 KSR2Q6VAB6 950 aa21.36■■□□□ 1.01
PKP3-209ENST00000533069 DDX46Q7L014 1031 aaKnown RBP21.36■■□□□ 1.01
PKP3-209ENST00000533069 C16orf71Q8IYS4 520 aaPredicted RBP21.36■■□□□ 1.01
PKP3-209ENST00000533069 BBOX1O75936 387 aa21.35■■□□□ 1.01
PKP3-209ENST00000533069 SLC4A2P04920 1241 aa21.35■■□□□ 1.01
PKP3-209ENST00000533069 EXOSC9Q06265 439 aaKnown RBP21.35■■□□□ 1.01
PKP3-209ENST00000533069 ZBTB38Q8NAP3 1195 aaPredicted RBP21.35■■□□□ 1.01
PKP3-209ENST00000533069 ZNF277Q9NRM2 450 aaPredicted RBP21.35■■□□□ 1.01
PKP3-209ENST00000533069 MAP3K2Q9Y2U5 619 aa21.35■■□□□ 1.01
PKP3-209ENST00000533069 ATP6V0A2Q9Y487 856 aa21.35■■□□□ 1.01
PKP3-209ENST00000533069 ZNF521Q96K83 1311 aa21.34■■□□□ 1.01
PKP3-209ENST00000533069 TCERG1O14776 1098 aaKnown RBP21.34■■□□□ 1.01
PKP3-209ENST00000533069 VAMP4O75379 141 aa21.34■■□□□ 1.01
PKP3-209ENST00000533069 SF3B3Q15393 1217 aaKnown RBP21.34■■□□□ 1.01
PKP3-209ENST00000533069 RRAGCQ9HB90 399 aa21.34■■□□□ 1.01
PKP3-209ENST00000533069 SPINK5Q9NQ38 1064 aaPredicted RBP21.34■■□□□ 1.01
PKP3-209ENST00000533069 CWC25Q9NXE8 425 aaPredicted RBP21.34■■□□□ 1.01
PKP3-209ENST00000533069 PI4KAP2A4QPH2 592 aa21.33■■□□□ 1.01
PKP3-209ENST00000533069 IRS4O14654 1257 aaPredicted RBP21.33■■□□□ 1.01
PKP3-209ENST00000533069 IARSP41252 1262 aaKnown RBP21.33■■□□□ 1.01
PKP3-209ENST00000533069 NEXNQ0ZGT2 675 aa21.33■■□□□ 1.01
PKP3-209ENST00000533069 GRAPQ13588 217 aa21.33■■□□□ 1.01
PKP3-209ENST00000533069 TMC4Q7Z404 712 aa21.33■■□□□ 1.01
PKP3-209ENST00000533069 PI4KAP1Q8N8J0 262 aa21.33■■□□□ 1.01
PKP3-209ENST00000533069 RBM46Q8TBY0 533 aaKnown RBP21.33■■□□□ 1.01
PKP3-209ENST00000533069 GRAPLQ8TC17 118 aaPredicted RBP21.33■■□□□ 1.01
PKP3-209ENST00000533069 ZNF428Q96B54 188 aa21.33■■□□□ 1.01
PKP3-209ENST00000533069 PCCAP05165 728 aaPredicted RBP21.32■■□□□ 1
PKP3-209ENST00000533069 VEGFAP15692 232 aaPredicted RBP21.32■■□□□ 1
PKP3-209ENST00000533069 FLIIQ13045 1269 aa21.31■■□□□ 1
PKP3-209ENST00000533069 SP8Q8IXZ3 490 aa21.31■■□□□ 1
PKP3-209ENST00000533069 DICER1Q9UPY3 1922 aaKnown RBP21.3■■□□□ 1
PKP3-209ENST00000533069 RTL5Q5HYW3 569 aaPredicted RBP21.3■■□□□ 1
PKP3-209ENST00000533069 G2E3Q7L622 706 aa21.3■■□□□ 1
PKP3-209ENST00000533069 JDP2Q8WYK2 163 aa21.3■■□□□ 1
PKP3-209ENST00000533069 DDX60Q8IY21 1712 aaKnown RBP21.29■■□□□ 1
PKP3-209ENST00000533069 LAMB2P55268 1798 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms