RNA–Protein interactions for RNA: ENST00000531709.6

NXF1-211, Transcript of nuclear RNA export factor 1, humanhuman

TSL 1 (best) BASIC

Gene NXF1, Length 4,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-211ENST00000531709 KSR2Q6VAB6 950 aa13.4□□□□□ -0.26
NXF1-211ENST00000531709 DDX46Q7L014 1031 aaKnown RBP13.4□□□□□ -0.26
NXF1-211ENST00000531709 BICC1Q9H694 974 aaKnown RBP13.4□□□□□ -0.26
NXF1-211ENST00000531709 TTC41PQ6P2S7 1318 aa13.4□□□□□ -0.26
NXF1-211ENST00000531709 CDC37L1Q7L3B6 337 aa13.4□□□□□ -0.26
NXF1-211ENST00000531709 MAP2P11137 1827 aaKnown RBP13.39□□□□□ -0.27
NXF1-211ENST00000531709 CCDC85AQ96PX6 553 aaPredicted RBP13.39□□□□□ -0.27
NXF1-211ENST00000531709 DNAJC25Q9H1X3 360 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 ZHX1Q9UKY1 873 aaPredicted RBP13.39□□□□□ -0.27
NXF1-211ENST00000531709 TYRO3Q06418 890 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 LARP1Q6PKG0 1096 aaKnown RBP13.39□□□□□ -0.27
NXF1-211ENST00000531709 UBE3BQ7Z3V4 1068 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 FAM200AQ8TCP9 573 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 PIBF1Q8WXW3 757 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 BRF1Q92994 677 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 HYPKQ9NX55 129 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 USP32Q8NFA0 1604 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 BEND3Q5T5X7 828 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 PI4K2BQ8TCG2 481 aa13.39□□□□□ -0.27
NXF1-211ENST00000531709 TMEM2Q9UHN6 1383 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 IGSF1Q8N6C5 1336 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 CLIP2Q9UDT6 1046 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 MTMR6Q9Y217 621 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 USP6P35125 1406 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 APPP05067 770 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 PRIMPOLQ96LW4 560 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 CCDC112Q8NEF3 446 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 CFAP45Q9UL16 551 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 TPCN1Q9ULQ1 816 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 AOX1Q06278 1338 aa13.38□□□□□ -0.27
NXF1-211ENST00000531709 FKBP4Q02790 459 aaKnown RBP eCLIP13.37□□□□□ -0.27
NXF1-211ENST00000531709 PROSER3Q2NL68 480 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 ZNF771Q7L3S4 317 aaPredicted RBP13.37□□□□□ -0.27
NXF1-211ENST00000531709 COPS6Q7L5N1 327 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 NEK1Q96PY6 1258 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 TRMT1Q9NXH9 659 aaKnown RBP13.37□□□□□ -0.27
NXF1-211ENST00000531709 PRAMEF22A3QJZ6 481 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 LIG1P18858 919 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 CCDC129Q6ZRS4 1044 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 SIRT1Q96EB6 747 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 TOMM22Q9NS69 142 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 SLC27A2O14975 620 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 SMC2O95347 1197 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 TNNT1P13805 278 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 KCNH5Q8NCM2 988 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 EAF2Q96CJ1 260 aaPredicted RBP13.37□□□□□ -0.27
NXF1-211ENST00000531709 TERF1P54274 439 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 TPM4P67936 248 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 KRT32Q14532 448 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 AMOTQ4VCS5 1084 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 HOMER1Q86YM7 354 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 XAGE3Q8WTP9 111 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 SUCLG2Q96I99 432 aa13.37□□□□□ -0.27
NXF1-211ENST00000531709 CRB1P82279 1406 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 AKAP4Q5JQC9 854 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 CHST3Q7LGC8 479 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 RAB11FIP4Q86YS3 637 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 A0A087WZG4 1122 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 Q6ZUG5 572 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 TTC6Q86TZ1 520 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 LINS1Q8NG48 757 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 IGSF3O75054 1194 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 SYNE3Q6ZMZ3 975 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 ANKRD24Q8TF21 1146 aa13.36□□□□□ -0.27
NXF1-211ENST00000531709 DDX19AQ9NUU7 478 aaKnown RBP13.36□□□□□ -0.27
NXF1-211ENST00000531709 SSH2Q76I76 1423 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 DIP2CQ9Y2E4 1556 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 A0A0D9SFI3 127 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 GOLIM4O00461 696 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 JAK2O60674 1132 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 ALDH1L1O75891 902 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 STK38Q15208 465 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 MYRIPQ8NFW9 859 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 TLR7Q9NYK1 1049 aaKnown RBP13.35□□□□□ -0.27
NXF1-211ENST00000531709 STK11IPQ8N1F8 1099 aa13.35□□□□□ -0.27
NXF1-211ENST00000531709 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.35□□□□□ -0.27
NXF1-211ENST00000531709 IP6K1Q92551 441 aa13.34□□□□□ -0.27
NXF1-211ENST00000531709 IFT172Q9UG01 1749 aa13.34□□□□□ -0.27
NXF1-211ENST00000531709 TATP17735 454 aaPredicted RBP13.34□□□□□ -0.27
NXF1-211ENST00000531709 RALYLQ86SE5 291 aaKnown RBP13.34□□□□□ -0.27
NXF1-211ENST00000531709 RNMTO43148 476 aaKnown RBP13.33□□□□□ -0.27
NXF1-211ENST00000531709 NFATC2IPQ8NCF5 419 aa13.33□□□□□ -0.27
NXF1-211ENST00000531709 ZSWIM6Q9HCJ5 1215 aa13.33□□□□□ -0.27
NXF1-211ENST00000531709 PYCARDQ9ULZ3 195 aa13.33□□□□□ -0.27
NXF1-211ENST00000531709 RIOK3O14730 519 aaKnown RBP13.33□□□□□ -0.28
NXF1-211ENST00000531709 LRMPQ12912 555 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 ANKRD13DQ6ZTN6 518 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 CCAR1Q8IX12 1150 aaKnown RBP13.33□□□□□ -0.28
NXF1-211ENST00000531709 ZNF396Q96N95 335 aaPredicted RBP13.33□□□□□ -0.28
NXF1-211ENST00000531709 SNRKQ9NRH2 765 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 BIN1O00499 593 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 HAND2P61296 217 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 ISM2Q6H9L7 571 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 ERCC4Q92889 916 aaPredicted RBP13.33□□□□□ -0.28
NXF1-211ENST00000531709 NAT10Q9H0A0 1025 aaKnown RBP13.33□□□□□ -0.28
NXF1-211ENST00000531709 NPHP3Q7Z494 1330 aa13.33□□□□□ -0.28
NXF1-211ENST00000531709 POLR3DP05423 398 aaPredicted RBP13.32□□□□□ -0.28
NXF1-211ENST00000531709 TFCP2Q12800 502 aa13.32□□□□□ -0.28
NXF1-211ENST00000531709 RPS6KB1P23443 525 aa13.32□□□□□ -0.28
NXF1-211ENST00000531709 CABP4P57796 275 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms