RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ISCA1Q9BUE6 129 aa13.87□□□□□ -0.19
CD44-227ENST00000528086 PDZRN3Q9UPQ7 1066 aa13.87□□□□□ -0.19
CD44-227ENST00000528086 NPR1P16066 1061 aa13.86□□□□□ -0.19
CD44-227ENST00000528086 HOXA10P31260 410 aaPredicted RBP13.86□□□□□ -0.19
CD44-227ENST00000528086 C1QTNF8P60827 252 aa13.86□□□□□ -0.19
CD44-227ENST00000528086 SLC10A5Q5PT55 438 aa13.86□□□□□ -0.19
CD44-227ENST00000528086 NMRK2Q9NPI5 230 aa13.86□□□□□ -0.19
CD44-227ENST00000528086 RNF181Q9P0P0 153 aa13.86□□□□□ -0.19
CD44-227ENST00000528086 DBF4Q9UBU7 674 aaPredicted RBP13.86□□□□□ -0.19
CD44-227ENST00000528086 SALL2Q9Y467 1007 aaPredicted RBP13.86□□□□□ -0.19
CD44-227ENST00000528086 PLBD2Q8NHP8 589 aa13.85□□□□□ -0.19
CD44-227ENST00000528086 CNKSR1Q969H4 720 aa13.85□□□□□ -0.19
CD44-227ENST00000528086 IL16Q14005 1332 aa13.85□□□□□ -0.19
CD44-227ENST00000528086 ZNF521Q96K83 1311 aa13.85□□□□□ -0.19
CD44-227ENST00000528086 COL4A5P29400 1685 aa13.85□□□□□ -0.19
CD44-227ENST00000528086 CEP350Q5VT06 3117 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 TCERG1O14776 1098 aaKnown RBP13.84□□□□□ -0.19
CD44-227ENST00000528086 LMNB1P20700 586 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 CALD1Q05682 793 aaKnown RBP13.84□□□□□ -0.19
CD44-227ENST00000528086 ANKRD13DQ6ZTN6 518 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 G2E3Q7L622 706 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 FAM9BQ8IZU0 186 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 NYXQ9GZU5 481 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 GPBP1L1Q9HC44 474 aaPredicted RBP13.84□□□□□ -0.19
CD44-227ENST00000528086 LTBP3Q9NS15 1303 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 FANCIQ9NVI1 1328 aa13.84□□□□□ -0.19
CD44-227ENST00000528086 ATP5J2-PTCD1G3V325 749 aa13.83□□□□□ -0.2
CD44-227ENST00000528086 NPHP1O15259 732 aa13.83□□□□□ -0.2
CD44-227ENST00000528086 HCLS1P14317 486 aaPredicted RBP13.83□□□□□ -0.2
CD44-227ENST00000528086 PARP10Q53GL7 1025 aa13.83□□□□□ -0.2
CD44-227ENST00000528086 UTP14AQ9BVJ6 771 aaKnown RBP13.83□□□□□ -0.2
CD44-227ENST00000528086 HYPKQ9NX55 129 aa13.83□□□□□ -0.2
CD44-227ENST00000528086 POTECB2RU33 542 aa13.82□□□□□ -0.2
CD44-227ENST00000528086 TRIM28Q13263 835 aaKnown RBP13.81□□□□□ -0.2
CD44-227ENST00000528086 PPP1R42Q7Z4L9 355 aa13.81□□□□□ -0.2
CD44-227ENST00000528086 WDR63Q8IWG1 891 aa13.81□□□□□ -0.2
CD44-227ENST00000528086 CACNA1FO60840 1977 aa13.8□□□□□ -0.2
CD44-227ENST00000528086 VAMP4O75379 141 aa13.8□□□□□ -0.2
CD44-227ENST00000528086 GTF2E1P29083 439 aaPredicted RBP13.8□□□□□ -0.2
CD44-227ENST00000528086 TWISTNBQ3B726 338 aaPredicted RBP13.8□□□□□ -0.2
CD44-227ENST00000528086 HSP90AB3PQ58FF7 597 aa13.8□□□□□ -0.2
CD44-227ENST00000528086 FAM89AQ96GI7 184 aa13.8□□□□□ -0.2
CD44-227ENST00000528086 CRAMP1Q96RY5 1269 aa13.8□□□□□ -0.2
CD44-227ENST00000528086 IGKV5-2P06315 115 aa13.79□□□□□ -0.2
CD44-227ENST00000528086 EXOSC9Q06265 439 aaKnown RBP13.79□□□□□ -0.2
CD44-227ENST00000528086 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
CD44-227ENST00000528086 TAOK3Q9H2K8 898 aa13.79□□□□□ -0.2
CD44-227ENST00000528086 ZNF277Q9NRM2 450 aaPredicted RBP13.79□□□□□ -0.2
CD44-227ENST00000528086 TRMT112Q9UI30 125 aaKnown RBP13.79□□□□□ -0.2
CD44-227ENST00000528086 ABCC4O15439 1325 aa13.79□□□□□ -0.2
CD44-227ENST00000528086 WDR90Q96KV7 1748 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 GLTPD2A6NH11 291 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 ALDH1B1P30837 517 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 CCDC93Q567U6 631 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 JARID2Q92833 1246 aaPredicted RBP13.78□□□□□ -0.2
CD44-227ENST00000528086 RRAGCQ9HB90 399 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 RNF123Q5XPI4 1314 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 SH3TC1Q8TE82 1336 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 ZC3H4Q9UPT8 1303 aaKnown RBP13.78□□□□□ -0.2
CD44-227ENST00000528086 DUOX1Q9NRD9 1551 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 LRRC37AA6NMS7 1700 aa13.78□□□□□ -0.2
CD44-227ENST00000528086 FKBP4Q02790 459 aaKnown RBP eCLIP13.77□□□□□ -0.21
CD44-227ENST00000528086 LTBP1Q14766 1721 aa13.77□□□□□ -0.21
CD44-227ENST00000528086 RTL5Q5HYW3 569 aaPredicted RBP13.77□□□□□ -0.21
CD44-227ENST00000528086 NLRP3Q96P20 1036 aa13.77□□□□□ -0.21
CD44-227ENST00000528086 MYD88Q99836 296 aa13.77□□□□□ -0.21
CD44-227ENST00000528086 METTL22Q9BUU2 404 aaPredicted RBP13.77□□□□□ -0.21
CD44-227ENST00000528086 PI4KAP2A4QPH2 592 aa13.76□□□□□ -0.21
CD44-227ENST00000528086 PI4KAP1Q8N8J0 262 aa13.76□□□□□ -0.21
CD44-227ENST00000528086 RPGRQ92834 1020 aaKnown RBP13.76□□□□□ -0.21
CD44-227ENST00000528086 MAP3K2Q9Y2U5 619 aa13.76□□□□□ -0.21
CD44-227ENST00000528086 ZNF541Q9H0D2 1346 aa13.75□□□□□ -0.21
CD44-227ENST00000528086 SLC4A2P04920 1241 aa13.75□□□□□ -0.21
CD44-227ENST00000528086 SF3B3Q15393 1217 aaKnown RBP13.75□□□□□ -0.21
CD44-227ENST00000528086 SOGA3Q5TF21 947 aa13.75□□□□□ -0.21
CD44-227ENST00000528086 KSR2Q6VAB6 950 aa13.75□□□□□ -0.21
CD44-227ENST00000528086 RIC3Q7Z5B4 369 aa13.75□□□□□ -0.21
CD44-227ENST00000528086 RBM17Q96I25 401 aaKnown RBP13.75□□□□□ -0.21
CD44-227ENST00000528086 PPEF1O14829 653 aaPredicted RBP13.74□□□□□ -0.21
CD44-227ENST00000528086 DDNO94850 711 aaPredicted RBP13.74□□□□□ -0.21
CD44-227ENST00000528086 GOLGA2Q08379 1002 aa13.74□□□□□ -0.21
CD44-227ENST00000528086 RTKN2Q8IZC4 609 aa13.74□□□□□ -0.21
CD44-227ENST00000528086 CELF1Q92879 486 aaKnown RBP13.74□□□□□ -0.21
CD44-227ENST00000528086 PSMD1Q99460 953 aa13.74□□□□□ -0.21
CD44-227ENST00000528086 ATP6V0A2Q9Y487 856 aa13.74□□□□□ -0.21
CD44-227ENST00000528086 IRS4O14654 1257 aaPredicted RBP13.73□□□□□ -0.21
CD44-227ENST00000528086 TOMM70O94826 608 aa13.73□□□□□ -0.21
CD44-227ENST00000528086 IARSP41252 1262 aaKnown RBP13.73□□□□□ -0.21
CD44-227ENST00000528086 CWF19L2Q2TBE0 894 aaKnown RBP13.73□□□□□ -0.21
CD44-227ENST00000528086 ZBTB38Q8NAP3 1195 aaPredicted RBP13.73□□□□□ -0.21
CD44-227ENST00000528086 CCDC191Q8NCU4 936 aa13.73□□□□□ -0.21
CD44-227ENST00000528086 MYH3P11055 1940 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 KDM2BQ8NHM5 1336 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 FZD9O00144 591 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 PCCAP05165 728 aaPredicted RBP13.72□□□□□ -0.21
CD44-227ENST00000528086 CASP7P55210 303 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 FLIIQ13045 1269 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 GRAPQ13588 217 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 GRAPLQ8TC17 118 aaPredicted RBP13.72□□□□□ -0.21
CD44-227ENST00000528086 CDCA7LQ96GN5 454 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms