RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TTC5Q8N0Z6 440 aa25.49■■□□□ 1.67
VPS28-205ENST00000526204 ZNF496Q96IT1 587 aaPredicted RBP25.49■■□□□ 1.67
VPS28-205ENST00000526204 ANKRD13DQ6ZTN6 518 aa25.48■■□□□ 1.67
VPS28-205ENST00000526204 MAP4K1Q92918 833 aa25.48■■□□□ 1.67
VPS28-205ENST00000526204 CCDC8Q9H0W5 538 aaPredicted RBP25.48■■□□□ 1.67
VPS28-205ENST00000526204 CSB-PGBD3P0DP91 1061 aa25.48■■□□□ 1.67
VPS28-205ENST00000526204 MYD88Q99836 296 aa25.48■■□□□ 1.67
VPS28-205ENST00000526204 DCCP43146 1447 aa25.47■■□□□ 1.67
VPS28-205ENST00000526204 SYT1P21579 422 aa25.47■■□□□ 1.67
VPS28-205ENST00000526204 MRC1P22897 1456 aa25.47■■□□□ 1.67
VPS28-205ENST00000526204 PSMA5P28066 241 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 ADCK5Q3MIX3 580 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 FMNL2Q96PY5 1086 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 RBM8AQ9Y5S9 174 aaKnown RBP25.46■■□□□ 1.67
VPS28-205ENST00000526204 MEGF6O75095 1541 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 KCNJ4P48050 445 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 NMIQ13287 307 aaPredicted RBP25.46■■□□□ 1.67
VPS28-205ENST00000526204 SIL1Q9H173 461 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 COPRSQ9NQ92 184 aa25.46■■□□□ 1.67
VPS28-205ENST00000526204 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.46■■□□□ 1.67
VPS28-205ENST00000526204 PDIA4P13667 645 aaKnown RBP25.45■■□□□ 1.66
VPS28-205ENST00000526204 CREB3L3Q68CJ9 461 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 LRP10Q7Z4F1 713 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 COL15A1P39059 1388 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 CPA1P15085 419 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 RNF20Q5VTR2 975 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 FAM227BQ96M60 508 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 TSPY26PQ9H489 355 aa25.45■■□□□ 1.66
VPS28-205ENST00000526204 C5P01031 1676 aa25.44■■□□□ 1.66
VPS28-205ENST00000526204 FSD1Q9BTV5 496 aa25.44■■□□□ 1.66
VPS28-205ENST00000526204 BOLA2Q9H3K6 86 aa25.44■■□□□ 1.66
VPS28-205ENST00000526204 F13A1P00488 732 aa25.43■■□□□ 1.66
VPS28-205ENST00000526204 FOXD4L6Q3SYB3 417 aaPredicted RBP25.43■■□□□ 1.66
VPS28-205ENST00000526204 FOXD4L3Q6VB84 417 aaPredicted RBP25.43■■□□□ 1.66
VPS28-205ENST00000526204 GDPD2Q9HCC8 539 aa25.43■■□□□ 1.66
VPS28-205ENST00000526204 TLR7Q9NYK1 1049 aaKnown RBP25.43■■□□□ 1.66
VPS28-205ENST00000526204 USP16Q9Y5T5 823 aa25.43■■□□□ 1.66
VPS28-205ENST00000526204 NAP1L5Q96NT1 182 aaPredicted RBP25.43■■□□□ 1.66
VPS28-205ENST00000526204 LARP6Q9BRS8 491 aaKnown RBP25.43■■□□□ 1.66
VPS28-205ENST00000526204 GADD45BO75293 160 aaPredicted RBP25.42■■□□□ 1.66
VPS28-205ENST00000526204 MSNP26038 577 aaKnown RBP25.42■■□□□ 1.66
VPS28-205ENST00000526204 CSPP1Q1MSJ5 1256 aa25.42■■□□□ 1.66
VPS28-205ENST00000526204 CYP27B1O15528 508 aa25.42■■□□□ 1.66
VPS28-205ENST00000526204 EPHA10Q5JZY3 1008 aa25.42■■□□□ 1.66
VPS28-205ENST00000526204 CCDC83Q8IWF9 413 aa25.42■■□□□ 1.66
VPS28-205ENST00000526204 KLHL34Q8N239 644 aa25.42■■□□□ 1.66
VPS28-205ENST00000526204 TMEM94Q12767 1356 aa25.41■■□□□ 1.66
VPS28-205ENST00000526204 COL18A1P39060 1754 aa25.41■■□□□ 1.66
VPS28-205ENST00000526204 LETM1O95202 739 aaPredicted RBP25.41■■□□□ 1.66
VPS28-205ENST00000526204 LARGE1O95461 756 aa25.41■■□□□ 1.66
VPS28-205ENST00000526204 GJB2P29033 226 aa25.41■■□□□ 1.66
VPS28-205ENST00000526204 UBE2HP62256 183 aa25.41■■□□□ 1.66
VPS28-205ENST00000526204 SLC27A2O14975 620 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 ANKRD1Q15327 319 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 RABL6Q3YEC7 729 aaPredicted RBP25.4■■□□□ 1.66
VPS28-205ENST00000526204 KLHDC4Q8TBB5 520 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 ATP5JP18859 108 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 TNS3Q68CZ2 1445 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 MED23Q9ULK4 1368 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 CNPY2Q9Y2B0 182 aa25.4■■□□□ 1.66
VPS28-205ENST00000526204 A0A0D9SFI3 127 aa25.39■■□□□ 1.66
VPS28-205ENST00000526204 CABP4P57796 275 aa25.39■■□□□ 1.66
VPS28-205ENST00000526204 CADPS2Q86UW7 1296 aa25.39■■□□□ 1.66
VPS28-205ENST00000526204 ALDH8A1Q9H2A2 487 aaPredicted RBP25.39■■□□□ 1.66
VPS28-205ENST00000526204 HMG20BQ9P0W2 317 aa25.39■■□□□ 1.66
VPS28-205ENST00000526204 RFX5P48382 616 aaPredicted RBP25.39■■□□□ 1.65
VPS28-205ENST00000526204 CCDC183Q5T5S1 534 aa25.39■■□□□ 1.65
VPS28-205ENST00000526204 NOL7Q9UMY1 257 aaKnown RBP25.39■■□□□ 1.65
VPS28-205ENST00000526204 PTPN12Q05209 780 aaKnown RBP25.38■■□□□ 1.65
VPS28-205ENST00000526204 ME3Q16798 604 aa25.38■■□□□ 1.65
VPS28-205ENST00000526204 FAM184AQ8NB25 1140 aa25.38■■□□□ 1.65
VPS28-205ENST00000526204 DDX17Q92841 729 aaKnown RBP25.38■■□□□ 1.65
VPS28-205ENST00000526204 TSGA10IPQ3SY00 556 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 PLBD2Q8NHP8 589 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 CPDO75976 1380 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 JCADQ9P266 1359 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 TNNI3KQ59H18 835 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 BLOC1S2Q6QNY1 142 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 MTMR6Q9Y217 621 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 FPGT-TNNI3KV9GXZ4 949 aa25.37■■□□□ 1.65
VPS28-205ENST00000526204 RFX7Q2KHR2 1363 aa25.36■■□□□ 1.65
VPS28-205ENST00000526204 UBE3BQ7Z3V4 1068 aa25.36■■□□□ 1.65
VPS28-205ENST00000526204 CABLES1Q8TDN4 633 aa25.36■■□□□ 1.65
VPS28-205ENST00000526204 CHRNA2Q15822 529 aa25.36■■□□□ 1.65
VPS28-205ENST00000526204 A0A087WZG4 1122 aa25.35■■□□□ 1.65
VPS28-205ENST00000526204 PKD1L3Q7Z443 1732 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 MCM5P33992 734 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 TFCP2Q12800 502 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 RNF214Q8ND24 703 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 DBNLQ9UJU6 430 aaKnown RBP25.34■■□□□ 1.65
VPS28-205ENST00000526204 TPCN1Q9ULQ1 816 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 SPATA31A3Q5VYP0 1347 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 PDCP20941 246 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 CCDC39Q9UFE4 941 aa25.34■■□□□ 1.65
VPS28-205ENST00000526204 RPS6KB1P23443 525 aa25.33■■□□□ 1.65
VPS28-205ENST00000526204 ST3GAL1Q11201 340 aa25.33■■□□□ 1.65
VPS28-205ENST00000526204 KRT32Q14532 448 aa25.33■■□□□ 1.65
VPS28-205ENST00000526204 UVSSAQ2YD98 709 aa25.33■■□□□ 1.65
VPS28-205ENST00000526204 USPL1Q5W0Q7 1092 aa25.33■■□□□ 1.65
VPS28-205ENST00000526204 TAF5LO75529 589 aa25.33■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms