RNA–Protein interactions for RNA: ENST00000519553.1

PTPN12-213, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 3

Gene PTPN12, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-213	ENST00000519553	IRF7	Q92985	503 aa		11.23	□□□□□ -0.61
PTPN12-213	ENST00000519553	FGFR3	P22607	806 aa		11.22	□□□□□ -0.61
PTPN12-213	ENST00000519553	SFSWAP	Q12872	951 aa	Known RBP	11.22	□□□□□ -0.61
PTPN12-213	ENST00000519553	NOM1	Q5C9Z4	860 aa	Known RBP	11.22	□□□□□ -0.61
PTPN12-213	ENST00000519553	LCE2A	Q5TA79	106 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN12-213	ENST00000519553	KRT76	Q01546	638 aa		11.21	□□□□□ -0.61
PTPN12-213	ENST00000519553	LAMC2	Q13753	1193 aa		11.21	□□□□□ -0.61
PTPN12-213	ENST00000519553	GRIN2C	Q14957	1233 aa		11.21	□□□□□ -0.61
PTPN12-213	ENST00000519553	RNFT1	Q5M7Z0	435 aa		11.21	□□□□□ -0.61
PTPN12-213	ENST00000519553	PHF24	Q9UPV7	400 aa		11.21	□□□□□ -0.61
PTPN12-213	ENST00000519553	USP20	Q9Y2K6	914 aa		11.21	□□□□□ -0.61
PTPN12-213	ENST00000519553	FZD6	O60353	706 aa		11.2	□□□□□ -0.62
PTPN12-213	ENST00000519553	CD33	P20138	364 aa		11.2	□□□□□ -0.62
PTPN12-213	ENST00000519553	TRIM26	Q12899	539 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN12-213	ENST00000519553	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN12-213	ENST00000519553	WFS1	O76024	890 aa		11.19	□□□□□ -0.62
PTPN12-213	ENST00000519553	RTCB	Q9Y3I0	505 aa	Known RBP	11.19	□□□□□ -0.62
PTPN12-213	ENST00000519553	CTBS	Q01459	385 aa		11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	FAM182B	Q5T319	152 aa		11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	ALKBH2	Q6NS38	261 aa		11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	RGL4	Q8IZJ4	473 aa		11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	MARK1	Q9P0L2	795 aa		11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	KCNH4	Q9UQ05	1017 aa		11.18	□□□□□ -0.62
PTPN12-213	ENST00000519553	ZBTB7C	A1YPR0	619 aa		11.17	□□□□□ -0.62
PTPN12-213	ENST00000519553	TRIP4	Q15650	581 aa	Predicted RBP	11.17	□□□□□ -0.62
PTPN12-213	ENST00000519553	TREML4	Q6UXN2	200 aa		11.17	□□□□□ -0.62
PTPN12-213	ENST00000519553	GPR152	Q8TDT2	470 aa		11.17	□□□□□ -0.62
PTPN12-213	ENST00000519553	KCNMB2	Q9Y691	235 aa		11.17	□□□□□ -0.62
PTPN12-213	ENST00000519553	C2CD2L	O14523	706 aa		11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	EPB42	P16452	691 aa		11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	GMPR	P36959	345 aa		11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	EDEM1	Q92611	657 aa		11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	GZF1	Q9H116	711 aa	Predicted RBP	11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	MBIP	Q9NS73	344 aa		11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	CCDC87	Q9NVE4	849 aa		11.16	□□□□□ -0.62
PTPN12-213	ENST00000519553	PDGFA	P04085	211 aa		11.15	□□□□□ -0.62
PTPN12-213	ENST00000519553	MX2	P20592	715 aa		11.15	□□□□□ -0.62
PTPN12-213	ENST00000519553	SLC30A3	Q99726	388 aa		11.15	□□□□□ -0.62
PTPN12-213	ENST00000519553	FAM13B	Q9NYF5	915 aa		11.15	□□□□□ -0.62
PTPN12-213	ENST00000519553	BIN2	Q9UBW5	565 aa	Predicted RBP	11.15	□□□□□ -0.62
PTPN12-213	ENST00000519553	MZF1	P28698	734 aa	Predicted RBP	11.14	□□□□□ -0.63
PTPN12-213	ENST00000519553	DNM1	Q05193	864 aa	Known RBP	11.14	□□□□□ -0.63
PTPN12-213	ENST00000519553	NUDT16	Q96DE0	195 aa	Known RBP	11.14	□□□□□ -0.63
PTPN12-213	ENST00000519553	POLI	Q9UNA4	740 aa		11.14	□□□□□ -0.63
PTPN12-213	ENST00000519553	SPEM2	Q0P670	501 aa		11.13	□□□□□ -0.63
PTPN12-213	ENST00000519553	CMTR1	Q8N1G2	835 aa	Known RBP	11.13	□□□□□ -0.63
PTPN12-213	ENST00000519553	PIK3R5	Q8WYR1	880 aa		11.13	□□□□□ -0.63
PTPN12-213	ENST00000519553	GSX2	Q9BZM3	304 aa		11.13	□□□□□ -0.63
PTPN12-213	ENST00000519553	C11orf16	Q9NQ32	467 aa		11.13	□□□□□ -0.63
PTPN12-213	ENST00000519553	EGFR	P00533	1210 aa		11.12	□□□□□ -0.63
PTPN12-213	ENST00000519553	BMP4	P12644	408 aa		11.11	□□□□□ -0.63
PTPN12-213	ENST00000519553	AAMP	Q13685	434 aa		11.11	□□□□□ -0.63
PTPN12-213	ENST00000519553	GJD3	Q8N144	294 aa		11.11	□□□□□ -0.63
PTPN12-213	ENST00000519553	CNTNAP3B	Q96NU0	1288 aa		11.11	□□□□□ -0.63
PTPN12-213	ENST00000519553	CNTNAP3	Q9BZ76	1288 aa		11.11	□□□□□ -0.63
PTPN12-213	ENST00000519553	IGF1R	P08069	1367 aa		11.11	□□□□□ -0.63
PTPN12-213	ENST00000519553	XYLB	O75191	536 aa		11.1	□□□□□ -0.63
PTPN12-213	ENST00000519553	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.1	□□□□□ -0.63
PTPN12-213	ENST00000519553	GGNBP2	Q9H3C7	697 aa		11.1	□□□□□ -0.63
PTPN12-213	ENST00000519553	SRSF11	Q05519	484 aa	Known RBP	11.09	□□□□□ -0.63
PTPN12-213	ENST00000519553	CCIN	Q13939	588 aa		11.09	□□□□□ -0.63
PTPN12-213	ENST00000519553	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.09	□□□□□ -0.63
PTPN12-213	ENST00000519553	DCTN4	Q9UJW0	460 aa		11.09	□□□□□ -0.63
PTPN12-213	ENST00000519553	BRPF3	Q9ULD4	1205 aa		11.09	□□□□□ -0.63
PTPN12-213	ENST00000519553	UBAP1L	F5GYI3	381 aa		11.08	□□□□□ -0.64
PTPN12-213	ENST00000519553	NDUFB5	O43674	189 aa		11.08	□□□□□ -0.64
PTPN12-213	ENST00000519553	IGHA2	P01877	340 aa		11.08	□□□□□ -0.64
PTPN12-213	ENST00000519553		A6NHS1	94 aa		11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	MAP2K3	P46734	347 aa		11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	FAM129B	Q96TA1	746 aa		11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	RBCK1	Q9BYM8	510 aa		11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	AVEN	Q9NQS1	362 aa	Predicted RBP	11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	ZFAT	Q9P243	1243 aa		11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	KLF15	Q9UIH9	416 aa		11.07	□□□□□ -0.64
PTPN12-213	ENST00000519553	SASH3	O75995	380 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	ADAMTS2	O95450	1211 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	SLURP2	P0DP57	97 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	PCSK2	P16519	638 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	NFKB1	P19838	968 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	USP5	P45974	858 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	BHMT	Q93088	406 aa		11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.06	□□□□□ -0.64
PTPN12-213	ENST00000519553	RPLP1	P05386	114 aa	Known RBP	11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	ARAF	P10398	606 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	TARS	P26639	723 aa	Known RBP	11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	MAPK1	P28482	360 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	KRT25	Q7Z3Z0	450 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	SYT9	Q86SS6	491 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	CITED4	Q96RK1	184 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	EFCC1	Q9HA90	598 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	PRR12	Q9ULL5	1215 aa		11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	11.05	□□□□□ -0.64
PTPN12-213	ENST00000519553	MARS	P56192	900 aa	Known RBP	11.04	□□□□□ -0.64
PTPN12-213	ENST00000519553	PCBP4	P57723	403 aa	Known RBP	11.04	□□□□□ -0.64
PTPN12-213	ENST00000519553	C8orf34	Q49A92	452 aa		11.04	□□□□□ -0.64
PTPN12-213	ENST00000519553	PDE12	Q6L8Q7	609 aa	Known RBP	11.04	□□□□□ -0.64
PTPN12-213	ENST00000519553	XKR5	Q6UX68	686 aa		11.04	□□□□□ -0.64
PTPN12-213	ENST00000519553	GPR182	O15218	404 aa		11.03	□□□□□ -0.64

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