RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 POTEB2H3BUK9 544 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 NEXNQ0ZGT2 675 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 HLFQ16534 295 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 COPS6Q7L5N1 327 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 NLGN2Q8NFZ4 835 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 CDCA7LQ96GN5 454 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 SYT17Q9BSW7 474 aa9.88□□□□□ -0.83
LIMCH1-222ENST00000515847 KIAA1551Q9HCM1 1747 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 PTPRCP08575 1304 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 TCERG1O14776 1098 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 MAP3K13O43283 966 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 NUBP1P53384 320 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 AIMP1Q12904 312 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 PARP10Q53GL7 1025 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 NYXQ9GZU5 481 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 SMC4Q9NTJ3 1288 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 CD2APQ9Y5K6 639 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 ANKRD36CQ5JPF3 1778 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 ARFGEF2Q9Y6D5 1785 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 ATP10DQ9P241 1426 aa9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 IBTKQ9P2D0 1353 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-222ENST00000515847 IPO8O15397 1037 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 VAMP4O75379 141 aa9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 SERPINB2P05120 415 aa9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 RIC3Q7Z5B4 369 aa9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 TRMT2AQ8IZ69 625 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 PLBD2Q8NHP8 589 aa9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 SETDB2Q96T68 719 aa9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 PDZRN3Q9UPQ7 1066 aa9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 NIP7Q9Y221 180 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 N4BP2Q86UW6 1770 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-222ENST00000515847 PXDNLA1KZ92 1463 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 ANKRD31Q8N7Z5 1873 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 GPTP24298 496 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 ST5P78524 1137 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 FLIIQ13045 1269 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 FKBP5Q13451 457 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 GIGYF2Q6Y7W6 1299 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 PPP1R42Q7Z4L9 355 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 SLC39A7Q92504 469 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 YTHDC1Q96MU7 727 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 PHAXQ9H814 394 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 METRNQ9UJH8 293 aa9.85□□□□□ -0.83
LIMCH1-222ENST00000515847 UBN2Q6ZU65 1347 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 C7P10643 843 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 MS4A1P11836 297 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 GTF2E1P29083 439 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 ATN1P54259 1190 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 PRR5LQ6MZQ0 368 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 ANKRD13DQ6ZTN6 518 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 CCDC24Q8N4L8 307 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 CNBD1Q8NA66 436 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 OTUD5Q96G74 571 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 API5Q9BZZ5 524 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 TRPC6Q9Y210 931 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 UTRNP46939 3433 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 CACNA1FO60840 1977 aa9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 COL11A2P13942 1736 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-222ENST00000515847 FAM177BA6PVY3 158 aa9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 BRPF1P55201 1214 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 G2E3Q7L622 706 aa9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 NBPF5PQ86XG9 351 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 ZNF34Q8IZ26 560 aa9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 FBXO3Q9UK99 471 aa9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 WWC3Q9ULE0 1092 aa9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 HDAC5Q9UQL6 1122 aa9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 TNRC6CQ9HCJ0 1690 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 BRCA1P38398 1863 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-222ENST00000515847 A0A0G2JLW4 131 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 DPEP1P16444 411 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 TGFB2P61812 414 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 TCIRG1Q13488 830 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 KSR2Q6VAB6 950 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 TPTE2Q6XPS3 522 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 DNAAF4Q8WXU2 420 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 BMP2KQ9NSY1 1161 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 ADCY9O60503 1353 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 ABCC12Q96J65 1359 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 DLEC1Q9Y238 1755 aa9.82□□□□□ -0.84
LIMCH1-222ENST00000515847 NTSR2O95665 410 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 CHRNA5P30532 468 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 RARSP54136 660 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 SUSD4Q5VX71 490 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 NUTM1Q86Y26 1132 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 CCDC191Q8NCU4 936 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 ARHGAP45Q92619 1136 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 RIC1Q4ADV7 1423 aa9.81□□□□□ -0.84
LIMCH1-222ENST00000515847 PI4KAP2A4QPH2 592 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 ATP5J2-PTCD1G3V325 749 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 YBX3P16989 372 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 PDE6BP35913 854 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 TRIM28Q13263 835 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 ERFEQ4G0M1 354 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 NLRP10Q86W26 655 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 C2CD5Q86YS7 1000 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 FTSJ3Q8IY81 847 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 MRPL50Q8N5N7 158 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 PI4KAP1Q8N8J0 262 aa9.8□□□□□ -0.84
LIMCH1-222ENST00000515847 LINS1Q8NG48 757 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms